Gene detail

Detailed information of amic_s0102.g27.t1 in Acropora microphthalma

Genomic Location: sc0000102_pilon:325906...336149
NR annotation: XP_029193922.2, amino acid transporter AVT1A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0102.g27.t1

ATCTTTGACCACTTTCTTTTGTTTGAGACAAGGACTTAATTATTGACGTTTACTTGACTTCAACGAGAACTTTATTTTCATACAATTAAACTTTGTCATTGCAGTTTTTCATGCAAAAGACTTTATTTTCACGCGATATATATAGTCTCTGTAAAACTGTCAAGCAGCTGAGGTGTCACCGTCATGGACGATCGAAAGACGAACTTCGGTTCTAACCAGCTTAATACTCCTGTTGAAGATCTCTCACAGGATTCGCACCTGAACTATCCAAAAAACATGGAAAACAGCGTGGCCGAAGGTGAAGATGTGGAAGACTGGGACGAAGACAGAGACGACAGAGAAATAATACAACGCGGCGAAAACTTTGCCTCTTTGGAGGCGGAAAAAGGGTTGACAATCTTCACTGCCGCGATTTTTATAATCGGAGAAATGGCTGGCAGTGGGGTTTTGGCGTTGCCATATGCTATCGTCTTCGCAGGGTGGACAGGGATCGCTATGCTTATTCTGTGTTGCTTTGCATCTGGTTATTGTGGAATGGTTCTTGGAAGATCTTGGACTCTTCTTCGTGAAAGACACAGAGCGTATAGGGGTCATGTACGCTATCCTTATCCAGCTATTGGGGAGAAAGCCTATGGAAGATGGGCATCTATAACGGTTACTGTTTGTATCCAAGTAACTCTATTCGGCGTTGCCGTAGTGTTTTTGATTCTTGCCGCGGGAAACATGTCCCATCTTATTGAACTCAAGGTGAGCGATGATAGTGAAACTGAGTTGCGCATTTGGCTTTTGATATGTTTTGCTGTTCTTTTTCCTTTGTCATGGCTCGGTACGCCTAAGGAATTCTGGGGAATAGCCGTTGGAGCCAGTCTAGCTACAGCTGTGGCGTGTGTAATGATTTGCGTTTGCATTGCCTTGGATATGCCGGAGGATTTGAAAAGCGTTGAACAACCTACTGTGCACTTCGAGAGCTTCTTTTCAGCGTTTGGAACGATTCTGTTTTCTTTTGGTGGAGCATCCACTTTCCCTACCATCCAAACAGACATGAAGAGATCCTCGAGATTTCCAGTGTCTGTGGTGCTTGCGTACATTGCTGTGATCGGCATGTACTTGCCTGTGTCCATTCTCGGCTTTGTTTCGTACGGCAAGGACATCGAGCCAAACATTCTGGACGTCATAGGACACAACCAACACCGCCTGTCTAAGGTCACAGTCGATATCGTATTGGCTCTGATTACGCTGCATTTGATGTCGAGTTTCGTCATTGTGCTAAATCCCGTATCACAGCAATTTGAAGAGTTTTTAAATATACCACAAaAGTTCTGCTTCAAAAGATGCCTTCTTCGATCAGCTCTTATGTGTTTTATTCTTGGCGTAAGCGAATTGATTCCAAAGTTTGGTCTAATCTTGTCTCTAATTGGAGGTTCCACAATCACCTTGCTTACTTTCGTCTTCCCTTGCTTGTTCTACTTACGACTTGAACAGAACATATCTCTACACATAAAGGTTCTGTTGTACGAAATTATAGCTATAGGCTTATTTGGTGGAGTGGCATCAACCTATTCTGCCATAAACGCAATTAGAAAAGAGTTCACCTAGTTAACCCTTATGAACGGAAATCCGAGCCCGAGCACAGTTATGAAGAGTAAAGAATACCAGGATGAGTATGAGATTTCGGCATCAACTTTGAGTATATAGCAGACAATAAAATACCGTTTAAAACAAGCGCAACACAAAATGGCTTCCAGTTAAAGCTTTTTGGGTCGATTCGGAGCATGGAAGGTGCATTCAAACGAAGTTAAGACAAAGTTAAATCATAGAACTAAAATTGTTGCTAAAACGCACCTTACAATCTCTATTGACAAGGAAATATCAACTCGAAAACTGTTTTTTAAGCCTTTGGCATTTTGAAGTCGATTTTGTGTTTAATATTTACACGTAGTACCTGTGCAGGGACCCCTACGTGCAGTCAAATCCAACCGAGAAACGAAGATGTAAGAAATTCTACTCTAGATTCTTCGTCTTAGAGAAATCGAATCGATAGTTGGGCCACATGAAATCTTCACAGCGCTCAGCCCCACCCCCGCCACCCCCATCCCCTCCCATGTTCAGGGTGTCATTAAATACAAGCATAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O22719	Lysine histidine transporter-like 3 OS=Arabidopsis thaliana OX=3702 GN=At1g61270 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002075 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48017 all species →	OS05G0424000 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.