Gene detail

Detailed information of amic_s0102.g58.t1 in Acropora microphthalma

Genomic Location: sc0000102_pilon:822953...827521
NR annotation: XP_027045696.1, small nuclear ribonucleoprotein E-like [Pocillopora damicornis]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0102.g58.t1

GTGCTTCGCGACGATTCAGAACGTTTTCCCACAATTCTTTGCAAGCCGTTTTCCGCCATCTTGATTGAGATCCAAGTTATTCACGCACAACGTCTTCAACACTCTATTCAAAGAAATCGAAGCAAAATGGCTTATAAAGGGCAGAAAGTGCAGAAGGTTATGGTGCAGCCTATTAATTTAATTTTTAGGTATCTGCAGAATAGATCCAGAATTCAAATTTGGCTGTACGAGCAAGTCAACATGAGAATTGAGGGCCACATTATTGGCTTTGATGAATATATGAATCTTGTCTTGGATGATGCTGAAGAAGTACACCTTAAGACCAAGAAAAGAAGACCGCTTGGGAGGATATTACTGAAAGGCGACAACATCACCCTTCTGATGAACACGCAACCAAGCTAATAACCATAAACCCTACCATTAAAGACTTTGTACAGCTGGATTGTAAACTCCTCAGGCATTTGCCTTATATTTGGTGCTCTTGTTCTCCTCATATTATAGTGTGGCTCATTGACAAAGAAGGCTAAATTTCAAAGATGACTTTTCTCCATTATTGTGATGAAATGAGCGTTAGGTCACTTAGAGTCACTGCAGCCTCTTTTTTTAGAGCTGGTTTGAGTGTAAGCATAGAATGATCATTCTTTTTTCTCTGCGTCTGGTTAAGTTTTAAAAAAAGTGCAGCAATAAACTGTTTTTTTTTTCTTTTAATTAATGTTAAACATGCTCTTGCAAGAACCGAAGCCTTTCCAAATTTATAACATGTAATGGTTTCATACTCTCCCGAAACGGTTGTAATGATGTTATTTTCTAGTGAATTTGTTCCAGACTAGCAAAGTCGTTGTATTTCACATCTTTTACTCAGTTAGAAACTTACTCTGTACAGAAAAAGAAGAGCCTGGGTTACCTGGGGTGAATTCCTTCATCCATGATGGCCAGGGCCCAGACCCGCTCAAAGGTTGGACAGTGTTATCGAGGGAAAGAATCAGTATCCATTGGATATAAGTACTACTAAAACCTGTTAAGTTATTTAGTGGATGGTGATTTATCGAATAGATAGTGTTATTCACCTTTGGAACAACTGGGGCCAGAAATCTATGGCTCTCCTTTTTGAGAGGGTCATTCAGTTTTGACAAGGTGCAATCCAGTCGAAAACTCTATGATTTTTCTTGCCAACGTCTTACACTTCTTTGTTTATTTGTCTTTTTGTTTGGAAAGTGAATACGGTAAATTTAATATCATGATAATCGAAAAGATGACTGTATTTAAACCACTACTTTGACGTCTATTTGAAAACGCAACACACTACGTTGACAGAAGAATACGTTCAAGGGTGTGAACATCCTCTTGCTCGCGTATTACATGATTACACAATTGTGCGCCTGTCTGACCCCTTTTACATCAAGTACTTAAAGTGGTGTGTTGAAAACTTTTTCCAAACAACTTCTGTGTTAAAACTTAACAAAAGTTAGTTTGTAGACACTCGAAACATGAAAAAGACGTCGTACAAACAATCCTACAATTTGGAAGAATTTCCTGACCTCTGTTTTGAAATAGAGCATGTCAAGGAAAGAAGTTTCACATTTATGTTTCTACGGTGCATATCCCTTGGTCATTAACCCGCTTCGTCGTGGCTCTACTCGCTTTACGAGATGTTTGAACGCCATGCTACTAAGTCAGAAGGTGGTATCCCTGTCTTACGCTTTTTGTTGTCGGTTTCGCGCGAGAAGTAATAGCCACACGTGTACTTTCCAAGGGTACTGAAGGGTGCCAATGAGTTGACCTGTCGCATCCAAGGCTCGACCAAGCGCTGTACTGGAACCACTTTGTTTTTTGTGTCTTGCCCACTTTGGCTGCTGTTTGCGTTGCCGCGAAAGCGGACGTTAGTAACAGCTTCTTTTAGTTCGCTGGAAATATGTCTGGAATAAGGAGCTCGCGTTATGACTCTCTGACCTTCTCGCCACGAAGCAGTTCGACAACAAATGTTGGTTGGCAACCAGACTGTTTTGAAATCCTTCCGACACTTGTCACATTTACAACATTGGCCCAACAATTGTCCCGTATTGGGCATATTGGCTTGATCAGCCGAGTCCTTCGATAAATGGAAAAATCTTTCACTTACGCCGGCTTGATATACTAACGTTTTTGTTCCTAAGACTATCAAAAAACATTACACATAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUG0	Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1
A4FUI2	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1
P62303	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR027078 all species →	Family	Small nuclear ribonucleoprotein E	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11193 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005687 all species →	Cellular Component	U4 snRNP	Interproscan
GO:0034715 all species →	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11097	SNRPE, SME; small nuclear ribonucleoprotein E	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.