Detailed information of amic_s0102.g6.t2 in Acropora microphthalma

Genomic Location: sc0000102_pilon:38709...56125
NR annotation: XP_029193879.1, LOW QUALITY PROTEIN: USP6 N-terminal-like protein [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92738USP6 N-terminal-like protein OS=Homo sapiens OX=9606 GN=USP6NL PE=1 SV=3
Q80XC3USP6 N-terminal-like protein OS=Mus musculus OX=10090 GN=Usp6nl PE=1 SV=2
P35125Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens OX=9606 GN=USP6 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004789 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00566
all species →		RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050302
all species →		FamilyRab GTPase-activating TBC domain-containing proteinInterproscan
IPR000195
all species →		DomainRab-GAP-TBC domainInterproscan
IPR035969
all species →		Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47219
all species →		RAB GTPASE-ACTIVATING PROTEIN 1-LIKEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0102.g6.t2. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20133USP6NL; USP6 N-terminal-like protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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