Gene detail

Detailed information of amic_s0103.g30.t1 in Acropora microphthalma

Genomic Location: sc0000103_pilon:486780...497435
NR annotation: XP_029191248.1, LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0103.g30.t1

AGCTATCAGGCGAGGTGAAATGATGGCGGATAATATCCTGGGTAAGCACTCGTTGGATGCCGAAAGTGGGTATGATGAATACGGCAATGGAGATTTGAAACGTATGAAAGTGGAGTCAGGAACCAGTGGAGGACCAGGGAACCCACATTACCAGCAACCGTCACCAGTAATTCATGTCCGGGGCGTTGCAGACGAAGCACGTGAACAAGACTTGCTACATTCTCTTTCGACATTTGGCCCAGTTAGCTGTATTACAATGATGCCAAAAATGCGACAAGCTTTGGTTGAATTTGAAGACATTGAATCTGCAAAGGCTGTCATGGAATACACAGAGGGTGGAAGTGGAGAGAAAAATTTAATTGTTCTTTGTGGCAGGCCTTGTTACTTTAATTATTCCAAAAGCAAGGCAATATCAAAAAACCTCAACGTGCCAATAGAAAACCCTCCATCCAGGATTCTCTTGATCTGCATTATAAATCCACAATATCCAGTAACAACAGACATTCTTTACACAATATTCAGCAAACAAGGTCATGTGTTAAAGATTGTGATTTTCCGGAAAAGTGGGTTGCAGGCAATGGTGGAATTTGCAACAGTAGAGCAAGCAATGCAGGCCAAAGATACCTTAAATGGAGCTGATATTTACACAGGCTGCAACACTTTGAAGATTGAATTCTCCAAGGCGGATTCACTCAATGTTTACAGGAATGACGAGAATACATTTGATTACACACAGCCTGACAAACCACCAGGACCAGGTCCAGTTAGACCCCCAGTGAAGGAAGGTCTACTCAGTCCACCCCCAAGGCGCCCATTTCCTCCTCGTCGTGGGGGTATGAGGATGCAAGCACCCAGGCCCTTCCTTCCTCCACGACCACCAGCCATGGAAGGGGCCCATGTTATCATGGTTTATGGTTTGCATGAGAGCAAGATGAACTGTGATAGACTCTTTAATGTTCTTTGCTGCTATGGAAATGTTCTCAAGATCAAATTTCTGCTGAACAAGCCAGGCACTGCCATGGTTGAAATGAGTGATCATGTGGCCTGTAACACCATCATACAGTGTCTTGGAAAACAGAAGCTTTTTGACAAACAGCTTGATGTCAGTTTCTCCAAGCAGAAATACCTCGTGCATCCAACATCGGTGTCAAATTTAGATGATGGGACACCATGTTTCAAGGACTTCTCTGAGTCAAAGAACCACCGATTCTGGACAGAGCAACAAAGCAACAAGAACCGTATATTCTCACCCACTAAAGTTTTGCATTTTTTTAACGCACCTCCTGACTTTTCAGAGGAGAAGGTTCTTGAGATGTGCTCCTTTTGCGGTGTTGAACCCCCACCAAGAGTAAAAATATTTCCAAATGCTACTCGCTCAGCATCTGGTTTGCTCGAGTGGAATGATCCGTTCCAGGCTTTGGACGCCATCGCAGCCTGCAACCATTACGTCATTCGCGATCCAGCTGCCAGGACAATCTTCACTGTGAAGCTTGCTTTTTCGTCGATGTCAAGCACTTAGTAAGACTATGGAGATTTTTACAAAGTGGAACCAGACCGTCGATGCAGCGTCGATGTCGGCAAACGGTCTTGCAAATGGTTTGAAGCGAAGAGGGGCATAACCTTGATGGCGTCTGATCTTCCGGCTGGTTGTAGTGTTGAGAAGGACTGTTCTTGGTTTTAACCGCCATACCTGAAGTCGTGTTCAGAATTAACTTTCACCTGAACCGGAAGTTATCTTCAAAGTCAAGTGATGACTTCCGCTGAGAAATCCAAGTCGAATTGTCACGTACCAACAACAATCCTTCCCTGGACTTCACTCTACTCGGCGGACGATCATATACCATCAAAGTTAAAGGGCTTTGTGTTCAAACCTCTACCTTCTCTAGTAGTCCATACTCGAAGTAACATGCAGTCATATACTTACGACTGCAGTAAAGAAGGACATTTCAATCAAGAGACAAACGTTAGCGTAAGGATTAAGTGTATACGGTATTTAATAAGTGATGTGACATTTGTATTTCTCGGTAACTGCTTTAGTAGAGCACTGTCCTTACGTAAAGCTCACTTACCGTTATAGTTGTAAAGCTTGTTTCATGACGCACCTTTTCTTTGGTCTAGTGGAAGTTGATAACACCTCTCCTAGGAAATAAAATTGTAAGGCTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14866	Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens OX=9606 GN=HNRNPL PE=1 SV=2
Q8R081	Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus OX=10090 GN=Hnrnpl PE=1 SV=2
F1LQ48	Heterogeneous nuclear ribonucleoprotein L OS=Rattus norvegicus OX=10116 GN=Hnrnpl PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13893 all species →	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592 all species →	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13159	HNRNPL; heterogeneous nuclear ribonucleoprotein L	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.