Gene detail

Detailed information of amic_s0103.g97.t1 in Acropora microphthalma

Genomic Location: sc0000103_pilon:1177298...1181241
NR annotation: XP_029191290.2, nuclease EXOG, mitochondrial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0103.g97.t1

ATTCCCGTAACGGTATATAAAATGGCTGCCTGGTTGAAAAGTCTTCGTAGTTATGTCAGTGGTGTTGGAAATGTAGCGACTGCTTTCCTTGTCGGTGCAGCCTTGACAAAAATATATTACGAAACCTCTGATACAGTAAATGGAAAATCATCCATTCAGAAACAAATTCAAGAAATTGTGGCGAAACATGATAATCTCAAGCATGGAAGTCATCTACGTGTCATCAATCCACCTCGAGTGGGAACAAACGTTGACGAATTGGACACTATTGCGGAAGATAACATTTTCAAATATGGACTCCCGAAGAGATCTCCGGAGTACTTGCGCTTCAAAAATCACGTTTTATGTTACGATCAAGCAAAGAAAACGCCTCGTTGGGTTTTGGAGCATTTGACCAAAGAAAAAATCAAAGGAGAAGCTGATCGAGTACATTCGGTGTTCAAACCTGATCCTAATGTTCCAGCTCTTTTCCAATCAAGTAACGATGACTATTGGGACAGTGGATGGTCCAGAGGTCACATGGCACCAGCAAGCAACAGCAAATACAACCAAGACGCAATGGATGCCACATTTCTCTTGTCCAACATTGTACCACAAGACCTTGACAACAATGCAATTTTTTGGTACAGATTAGAAGCCTATTGTAGGAGTCTAACAAAAAGATATTCCAATGTGTACATAGTCTCTGGTCCACTCTATTTACCAAAGGAACAAGATGGGAAAAAGATTGTTACATATGAGGTGATAGGAGCCAACAATGTTGCAGTTCCCACCCACTTGTACAAAGTTATATTAGCAGAGGACAACGATAAAGAAGCAGTACTTGGTGCATTTGTGGTTCCAAACAAACCCATCAACTTTGAATATAAATTACAGGACTTCCAAGTTTCCTTGGGCGATTTAGAGAAATATTCAGGTTTGGCATTTTTTCCTTTCTTTGATGCTCACAAAGCCAATGATCTTTGTGTATCAGATGGCTGCAAGCTGCTTTCAAAGGAACGCATGGAGTTGATATCCTTTGGTCGACGCCTTAGAAATTCATCAAGTTCAGAACGTTTGGAAATGGTTTGGGAAGAAATGAAACAAAATGGGGTAATACCTGATAGCTATTTGATTGATATTTATGAAAAAAGAAAGAGAGCATTAATGCAAGAGGATAGGAAATCTGTTAGGGATATTTAAAAGGACAAAGGTGTCGTTGTCATCAGAGTTCATACCGATTGGTAATTTTTTTTTTGTATATCTGTTTCTGACGTGAAGCTTCGTAGTAAAATAATCACCTTGTGTAAAGAGAtatgttcaggattgcacacaattagctacatgccgttgtcaaaaagtatcacgaagtgagcccttcaccaccacatgcagtcatgcattgtcctcctaactgaagtcatcatggagaaaaattcaacaaccttaatgctaacctcaataaaaataaccaaactcaaatgctaacccaaatgttacaaacaggtattttgcgttcaaatttaACAAGACAATTGCCATAATAGTTGAGATTGCATCTAAATACATGCATTGTTAGACAGAAGTAGAGACGCTTGATGTAATCCAGCCTCCAGCAACCACTGCTTTTCTCCACGGAAATCTGGCATCCACCATCCAAGCAGCTGCAAACACCATCTAGAATCCAAGAAAGAGCAGGCATTTGCATCCACTATTCACACCCAGTAGCAATCCAGTGTCCAGAGGGAAGTGATTACCTTACTGTATAATtatgacacaaattgcttttgttagctcattacaaagagctctcaaattgatgattattttcttgtaatagcattcttggttgccaagttatccaaggctttgatttatgcaaattatctaggacttgtgacgtgacagtgtggataccaaatgatgtaagatatggaatttctgtgcaaataccaagtctacagggtttgagattttgtagggtagatgtgctgcaagaactacacattttgttagtggatatgatgtcatcatagcaacatactcattaccagacctctatcttcccaaaatgaaaaatgcctcatttgttgctccagagtctaatggaccttcttttgattgtgctgtataacgtccgcattcactcgtacccactgaatgaagaacaagagcaagtgttaaacacttcttaaagaagggaaacctttgaatggagagggcctggagcccactgagttgccatggaaatctcatagtggatgtgtcatcgaactttgtgatgagtgaaacaactataaaaagtttcagttcta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IH72	Nuclease EXOG, mitochondrial OS=Xenopus laevis OX=8355 GN=exog PE=2 SV=1
Q8C163	Nuclease EXOG, mitochondrial OS=Mus musculus OX=10090 GN=Exog PE=1 SV=1
Q502K1	Nuclease EXOG, mitochondrial OS=Danio rerio OX=7955 GN=exog PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003315 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan
PF18026 all species →	Exog_C	Endo/exonuclease (EXOG) C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR041003 all species →	Domain	EXOG, C-terminal	Interproscan
IPR020821 all species →	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR040255 all species →	Family	Non-specific endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13966 all species →	ENDONUCLEASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15050	EXOG; nuclease EXOG, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.