Gene detail

Detailed information of amic_s0105.g19.t1 in Acropora microphthalma

Genomic Location: sc0000105_pilon:644726...662387
NR annotation: XP_044183216.1, hemicentin-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0105.g19.t1

AGCTGATGCAATGACTATTGAGTCAAAGGttcataattccaagaagcctgttatcgcatattttggcCtccaaaacgggactgggattgccttcatcggaaacaatattaatttaacatgcatcatggaaaacactgacgaggcaactttcttgaagtctgatgaccctgtggacgaaagcaagagagttacctacttttatcaaCgttCtggtgataaattgtacgccaatcttgaaatctctgaagtaaagaaaaacgattcaggagtttatacatgcgttgcatacagagctggaattctagctaccaggaaatttgtattgaaaacagCCTTTTCAAGCCATGCAAGACAGAAACGCAATATGCAAGACTTAAAATGCCACAATGGAACTTTGACAAATGGTGTTTCTAAATCCCCATCTGAACCTATTCTTACGGCTGCAATAAAAGGCCCTACAAAGAATGTCAATGAAGGGAATGATGCCACATTTCATTGTATAGTTCATTCGTCTCTCCCAGCAAACATAACATGGTTTCATAATGGCAAGCCGGCCCCACTGATGAACAACAGTCTGCATCGATACTTTCAATGCAACACAGTTTTCCAGCTTCGAAGAGTGTCATCCAAAGATGCAGGGAATTATAGCTGTGTTGTCAACAGTGCACTTGGAAAAGCTACAGCTTCCTCTCGAATGTCTGTTATTCCGAGAGACAAAGAACCAATAATACTTTTCATGGGGCTGGAGAAAGGCAAGGATTCTAACACTGCAATTGTTGGAAACAATGTGAATTTAACATGTATAATTTACAATCCTCAAATACTGAATACATTTGAAAAAGATGGAAGGGACTTACCCGAGGACAAAGACTACACTTACCATAACTTTGGAGACGATGAAGGCAAAGTTAAACTCTCTGTTCTAGAAATAAAGGATGTTACTTTGGAAGACGCGGGAAACTACACGTGCGTTGCATTTCGGGAAGATGCGACGGTTTCCCCTTATGACTCTTCCACAAAGACCTTAGCACTTGTATTTGGTGGTATCGGTGTGCTGATTCTTGTGGGTTTAGCATTTATTAGCCTTCGTAACAGAAGGCAACGGTTGTCACGCTACTTTACGGAAAGGAACCGAAACAGCAACCAGGACGCTAGTGTTCCATTATCACAAACAGAATTATCTGTCACGCAGACTGAGCCGAACGGCGAGTGCGTAAACGAAGCAAACCACAATCATGAAAATATAGAAAAAAGACCTCCTGAGAAAGATTACGATGCTAGGTACGACGTCTTCATTTGCTACAGCTACAAAGATATTGGGTGGGTCAAAGAACTCGTAGCAGAGCTAGAGAAGCTACATTTTGTCTGTTGCATCGACTTCAGAGATTTTGTTCCGGGTGCTGCTATCGTTGAAAACATCTCAGAAGCAATTTATTACAGTGCGAAAACCATCGCTGTACTGTCACCGAATTTTTTGAACAGCGAGTGGTGCAACCGTGAGCTCCAGCAAGCACTGACCAGGACACGCAAGCATCAAGTTGTACCGATTGTTTACAGGAGCTGTGCGATTCCTTTGACTTTACAAGACAAGACTTATCTTGACTGGGAAAATTGCCTTGTCAAACCGTTTTTCTGGGAACAACTTGAAAAAGCGCTGAAGCGACCATGCGATGGATGGATTGGTCAGTAAGCAACTACCAGCGTTGCCGATGTTTATTGATCCTCAACTGTTCTTTGAAGGACAGCATCGCTTTCACGTTGTGTGTTTTTGCAACGGATAGCTCGTTTTTTCTTCTACAGATGCCGCAATTTTTGCCATCAGCGCCGAGAATAGAGACCTCTAGCTGGTTCCAAACCAGGAAGCTCCCGAAGGATGGACTTAACCTTCGCCTCTGTTGTCTTACGCAATGGAGTGATTTATACTTCATAGACGGTTTTCTATCAACAAATCTCGATTGCAATGGGTCCGACAGGTAGTGCGAAAAATTAAGAATGTTGTCAAATTAGTCCTCGAGTCGATTCCAGCGAAGTAAACATTGAGGAGTGTAACTTAAGTCATTGATCTTGCGGCCGATGGCAGAGACTTTGCCATGAAAGTGGGACAGGACATAAGGCAGCGTTTGTGAGGTCCCCATGAGGTAGAGCCTGTGCTTTGAGATCTTTTGATCTGAAAAACCAAAAGGAAAAAAAACGATTTGAAGAAAACCTTATTTGAAACAAAAACTTATTGCTTTGATAATTATTTCGTCATGAGCCTTTTGTTTTCATATTATTCAATGTCGGCGAAGTGTTTTATGTTTGTTTGGCAAAAACGGTTTTCAAGTGACGAGAGAATGAGAGCCATTTCAGAGTCttcaaaatcttgtcacttttagattactaataatttttgcagcagttttgtgaatacagaatctgcaatgtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2
Q0ZUL9	Toll-like receptor 6 OS=Dasypus novemcinctus OX=9361 GN=TLR6 PE=2 SV=1
Q15399	Toll-like receptor 1 OS=Homo sapiens OX=9606 GN=TLR1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015621 all species →	Family	Interleukin-1 receptor family	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890 all species →	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05173	IL18R1, IL1RRP, CD218a; interleukin 18 receptor 1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.