Gene detail

Detailed information of amic_s0107.g19.t1 in Acropora microphthalma

Genomic Location: sc0000107_pilon:289460...299555
NR annotation: XP_044178950.1, myeloid differentiation primary response protein MyD88-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0107.g19.t1

GCCGGTGAATTATCATAGGGGGGGTTGTATCAGTGAGTACACCATGGTTGGTTGGTTTTTCATGACCCCTAAATGTGAAACACAATTTTCTTCCAAAATGGAACAAAAGTCTCATTATCATCACCATTGACAACTTCAGCTCTCAACAACAAAAGTCCTTTGTTGGACGTAGGCCTTCTTACAACATTGCTGTGCCACTTGGGGTGTCTAAAAGTGTAACCAGAAATGAAATGTACCCATTGAGGATAGCGTAACACCTTTTGGCAAAACTAATAAGCTATGTACCAGTCATTAGATTAATGGACAGGCATACTGAAGACAGTGAAAATGTTGAGTCAAATGAAAATCGTGTGTCAGGTCAAAGTGATGAAACTGTTCAAAATTATACTACACAAACTCCGTTCGAAATATATGAGAAAACACAAAGTAGAATCCCTGTTACTGTGCTGCGAACTTCGTTTGTTTATATAATTTCAGTTATACTGGCAGGCCGCTTCAGGGCCCTGGTATAATTGCTATTATGAGTCATATGAAAGTTGAAGGAATCTTCAGAAATTCTTATACATTTTGTTTACAGTACAAAATAATATGGATATTTATCTGATGATACTTTAATATAGAAGTCTTCAATGACAAAAGTTATAGGTACACCTACATAATTTTTTGTAGTTCCCCTCCCTTGATCCTTACCTAAAATTTGCTGACCCTGCCCCTATCTGCACTAGTTCCCCCTCCCCACTCTATGATGatattattattgactggtcccttaagaataataataataagtaatagtaattggaccgaatggagtacaattcagggagtaatcgggtgagtaatttcgatttgaaattacaagcatgattactccctgaattgtacgacacaaagtccaattactaataattattaatggtaactataacaaaatttgagaagaatatgacagtggtataaactatttgacaggttgatatatattcaacttctgagctagatgctgaaaaagaaaccattcaagtgcaactagtgcgagcttgatgacgcgtactgtccaattattactcaggcatgacacgtacaactgtccaattacaagcgcacgacgtgtgcaactgtacaattacagctcaaatcagggctgctgatgaccaatcagattcaagaattttgatatagttatgattataataataatAATAATAATAATAATAATAATAATTATAATAATGTAATTGTTAAAATGTAACAATAATTATTATTTTTCAAGAATTTTGTCCATAACCTTATTAGTGGCCTGGATCCTTCATCTTGATTCCTACCAGTCTggttccagttgttcaaaggatggacagagccatccagtgggtaaatactactaaaacccattgggctgtccaacagttaaggctgttctcccctgtaacaactggggcctggaTAATAGAAGTTTCAGCTATGGTAATATTATTATCAAACTGCATTCTTTGCACTTCAGTTCGTGGCTCAagttgaagtgcaaagaataaactgaaattacagacaaagaaaataagattagaaagagtgatgtttatgatatctcttggaaatagaCCAAGGCCAGGCTTAGTTGCCTGGCCTTTAGTTCATTCAAAGGCCAGGCTTAGTTGCCTGGCCTATGAATGAAAGTGAGGCTGAGGTTGATCTTTTTTTTCATCGTAATCATGTTGTCCTCATGTCAATTAGTAGTACGGTTTCTGAGGTTTTTTATTTTCATTTATCTCTTGTCTGTGTTCACAGATGACACTGAAGACAGGCCGACAACACACAAAAGATACGATGCCTTTGTTTGTTTCGCTGCACAAGACAAACAGTTCTTGAAAAAGCTTGTCACAACAATGGAAGCACAACCCTATAATCTACGTCTTTGCTACACAGAGCGTGACTTCCTGGGAGGTGGTTGCTACCTTGAAAATGCTGCTCTTGCTATTGAACAGAGGTGCAAAAAATTTGTTGTTCTTCTGTCCAAGAACTATGATGGTAGTGACGGAGCTGTTTATGAGTCACAGATTGCAATTACCCTAGAACCGGGAGCACAACAACAGCGCATTATCCCAATTCTTTTGGAAGACGAGTACCGCAAAACCATTCCAAAGCCAATGGCTCATCTTACCTATCTTGATTATCCTCGATGGCAAGAGAACATTCCCAAATTCTGGGAGAAATTAGCAGTGTCCCTGGGATGGAACCAGAGTCAGACGTCATGTAGAACAGTGCTCCCATCATCAAATTTGTGCATCAGATGTACTCCATCAAGACGGCCATCGAAGTTCATCTTTGGAGTTCGCTTCAGATTTGGCAAGAAAAAGAAGAAGGAAATCATGTTGAAGCGTACATGAAGGGTGAAGTCGAGATATCTGTGTTTGTTTGTTTGTATTGAAAGGCAAAAGAGGTTGTCAAGTTACATTTGTAAAGCATTGCTAATGTGTCTGAGAATGTGACCATAAAGGAAGGAAGGGGTCTGTTGGCAGTAGCGATAAAGAAAATAGCTGTTTGAAGTAAAAGGATGAGCTGAAGATTGTCCTTTTTTTTCTGTATTTTTATTTAAACAGAAGGGAGACTTAAGTAACTTTTAAGCTTGACCCTTTTGTGAAATGCAGAAGAATAAGCAATAAGTTTCCCCCTGTTTGTTTTATTTTTGTAGATCCAGTGTGTGAAACGTTTTTATTATAGTATTTGCAGTCGTAGGGATTTTGTTGTCTATAGTTGTAGAAAGGATTTGgaaatttaggacaatttagaaatatcgcgagtgttatttatgccaaatatcacttacaaatcatgtcattatttgttcatactacaacctgagaaattcacccatgtaacaccatatgtttatttttgtcgaggtgttttgctcggttggcgagcaaattggtttcaaagttcttgttttcgtcccagctggtccagccattgatccaggtcgatgtagttttcttagaattttggatagtagcattttcatgactttcttttagttcctgaatttccagaattttaaaatctggaaatctttcagcaattatttcgtgatttggttaccatagtaactgtaactttcatcagtaaatacctctcggccaatgaaattctcagttagtagtataaACAACGGAATTTTTCAAAAAATGATGGCAGTGTTTGGAATTTAGACTTTGTGTTGTTTAGTCGTTATTTAATATGCATGTAGTTGTGTTAGGTTAATATCTGGCCCTAACCACAGGCAGGATTTGCTTAATTTTGGGAGGTGTTAGTTGCAAGGATTATAAATTTTATTGCTATAACTTTTTTGACGAGAATTTCGTAAGACTAGGTAAGGGTTAAAAGTCAGCGTGTTTACATAGGGAAAGAAACGATTACACCTTACCCTAAACTTCTGAATGGCTAAAAACAGTGGTATTTAGTTGACGGGGATGGAGAACTGCTTCTTCCTGATTGAGGACTAACATTTTTACATTTAACAGCAGCTTTGTAATCAACGTGATGGTAACATTGCCCCATATCAACTCGGTTGGCTTAAAACTTGTAGGTGGTCTTAGACGAAAGAGAAGTGTGTCGCTTTTCTAGAGTAAACTTTAGATATCGTGGCCTTGTCAAGGTCAATATACTTTTACATtttattggacgtttatggaccgatagacccaatcggctaactcactgttgtacccaattcaaaccctttgggaataaaacgttttgtttcaggaatttccatatcatttaaatgtgaatgccacattctaatgcaaatgcaacacacaaagaatcttaaccccgggagatttgaattgggtacaacactgagttagccgattaggtctattgcataaatggccgccaaaaaaatattttattgtctttgtgctaattagacttactagcctcgttagcacgacaaagtacaaaagaaatgttcctttagaatgagacttgtagtcctgattagcaaatagactaaaagaataattttttggtcgccatatatggaatcgatctatTGGACCAATGGCCTTATAGTAACTTTGTCAAGGTAAATGAATAAGTTTCAATTGAAAAACAGTGATTAAATAGTTGTTTTGTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22366	Myeloid differentiation primary response protein MyD88 OS=Mus musculus OX=10090 GN=Myd88 PE=1 SV=3
Q6Y1S1	Myeloid differentiation primary response protein MyD88 OS=Rattus norvegicus OX=10116 GN=Myd88 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017281 all species →	Family	Myeloid differentiation primary response protein MyD88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079 all species →	MYD88	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002755 all species →	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976 all species →	Molecular Function	TIR domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0107.g19.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.