Gene detail

Detailed information of amic_s0108.g16.t1 in Acropora microphthalma

Genomic Location: sc0000108_pilon:630553...655941
NR annotation: XP_044163846.1, uncharacterized protein LOC114950618 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0108.g16.t1

ATGGATGGGCTTCCTGGGGCTGCTACGATGTTAAATTTGACATTGACCGACTTGTCCTTAAAGGAAACCCTCAAGGTAGCTGCACCAATGTTTTCTATCTCAGAGCCTCCATATCCTCTTAAAACGTTCTTACATGGAAGGATGGTAATTGGAAAGGGGAAAAGTTGGAGGTCAACTGGAGTTCGTGATGATTTGGAGTTCTTACCTGAAGGAGAACTGAGCAATGTCCAGCTTTGTGCATTGCACATGGAAATGACAAATACTGAGCAGCTCCTTGGTTCTATAGGCCTGGTTGCGTACAAAAATGTCAACAGTTTGAAAGATGCAAACAATGTGTTACGAGGTTATGGCCCTGAATCCTTCAAGGAAGACAGACTTACAGTGCAAAAGAAGGCAGGACAGCAAACAGAAATAGGAAAGCACAATATCCATGTTCGTTCAATGTCAGAAAAAACAATTTTATTGGATTTTAGAGGGTTGAAAAAAGTATGTACTGTCAACAGTGATGAAAATGATAAAGTCTCGTTAGTCAAACGCGTTTTTCAAACACATCTACAGACATCCTCCGACTCTTTGGCACACGCTATTGTATCACTGCAGCGGTATGATGCAGAATGGGAAGACCTTGTTGATATCGACATGGCTCAAATCAAACACCGCGATAAAATAAAAGTGCAGATCATAGACAACAGGGATCCAGACAACAGCCGAAAATCTTCAACACGTACAACAGATGGAACTTCTGCAGCTGGTCTGGATAGTCCTGCATCGGTTGAACGCGTTAATAAACCTGGTGTCGGCGTGGAACAGTTGATCAAAAACCTGGAAGATCAACGAAGAGCTCTGGATTACAAATTCAGCATCTCAAAGGCAAAATTGGAATCCCTTAAAGTCGCTCCAAGGGACAGAGGTCTTGCAGGAAGGTACTCAAATTTTACCTGCAGCAGTTGCCATTACAAAGGTCATCGAATCAACAACTGCATGCTGCAACCATGCCGAGGTTATTTTGAATGTGGCCAGCTGTCATTACACCGAGAACATAGGGATGATGTGAAAAAGGCTGAAGCTGAAGTAAGAGAAGTTCAGAAAGAGATTAAAAGAAACATGGAAGAAGTGGAAAACTACAAATTGCTTAAGGAAAGAACAAGAACCAACTTTTTTGCTGTCATTAGAAAGAAGCTGCAGTGCTGTAATCCCATCAAGTATTCAAACAGAACAACACTAGACAATGATCTAAGAGTTTTGGCTTCTGCATGTAATCACAGGGTTCCTTCAGACAGAGCAGATTTAGAGCAAATAATCGAGGACTATAGAAATAAGGCAAATAGCATGAAGTCTGTGCAAAGTGTTAATGTACATGATATTTATGGTAACCACAGTGTGCTCCAGAAACAGAGTGTGAGCCACCATTGTACATCACCAATAACAATGCACATTTCTATGCCCCATTCACCCCCTTACCATGGAACTAGAAGTCCAGTACCATACATGCATCATAGAACCCCAAGCCCTGGTCCCCAAACTCAGTCACCATATATGCAACACTCAACTTTAAGCCCAGGTCATCAAAGCCCAGTGTGGCACTCTTCTGCTGGAAATGTGAATTACAGATGGCAGAATGCCTCATCTGTTAGAAATAGGTCTCCACACTATTATTCTACACCAAGGAGAGGGCATCACCAGAGACCACAGCAGACACATTTCAACCAGTCTACCTGTAATTATAGAAAACGCCAACATGACCATGACCATCTTTCAAAGAAAAAACTTAAGTATGACAGCAAAAGTCGTGGCAGAAATTTCAGGGAATCTCTTAATGTGGTAACTGAAACTAAAACAGCTACCAAAATTGGGTCAGATGATGAAACACAGGATGATTCTCTAACAGAAAGCCCTGCCCCTAAAACAAGTAGCAAAGGAGAAATAAAAGTTATCGTGGAAGCTGAAGCCGTAGAAAACAACTCAGAAATAGCTAGAGAATATGGACTAAGCGAATCCATGGTGCGACGCTGGCGAAGAGACCAGGGGACTATTCTTTCTGGCGAGCTTAAGATGTCTGCAAAACGTGCAACGATGGGCCGTTTCACTCCCAAGTATCCCAAACTAGATCAGCAAGTGATGGAGGGGTTTTCAGAGCAGAGAGACCAAGGTATTGCCGTGAGTGGATTAATGCTTCGTCTTAAAGCCAAAGAATTGTCAGAGGATCCTTCCTTCAAAGCTTCAGGTGGGTGGTTTTATTACCGTTCGTATGCTGTTGCAGACTGGCGTGTTGGAGTTTGGAAGTGTGTTTCATCTCTCAGCAGAGTTTTTAAGCCTGGGAAGCCGCTCGCTCGCCCGATATATTCTTGGAGTAAACATGGTTACTCTTGTAGTTATCTTCCTTCGAGTGAAGACCCCGCTATTTGTATGGATGAGGAACTGAACCCTGGTCCTACCTTGGTGAAACCTGTGGTACACCACTTGCTGAGTGAGGAACATGGTATTTCTCATTACATTTCTAACTCGCATCGTGTGGCTGTTCGCCATGTTTATACAAGAGACAAACTCATTGCTTTATGCCCTTTTCGGATTAATACCTTCGATTGGCCTCGAACCCGTTACATGAGGAAGCCTTATTTTCAAAAGAAGATGGTCTCTTCACGCAAGTTAAAATCTGTTGACTTTGATGCCATAAAAAGTTGCATTGAGCGATCTGCACTCCTAGCACATGATCCTACAAACATCTCCCAATGCGTCAACTTGTATAATTCTGAGTTATCTAGAATTTTGGATTGCCATGCCCCCTTGACTACACGTGTGGTTACCATTCGACCAGCTGCGCCATGGTATAATGATGAGATCAAGATTGAGAAGAAGAGAAGAAGGCAATTGGAGAGGCGATGGCGGACTAGTGGATTGCTGTCTGACCGCCGAAGGTTCACAGAGCAATGTCGTTTAGTCAATCAATTGCTATGGTCCTCTCGATTTAGATTCTACTCGAAAGTTGTTAATGAAAATCAATCCGACCAAAGAAAGCTTTTTAGTACTGTCGACAAGCTGCTTCATAGGACACCTGATGTGATTTATCCGCCGCATACCAATGCAGAAGAGCTAGCTAGGCGCTTTATTACATTCTTTGCTAATAAGACTACCACAATACACCAGGGCCTAGTTCAACGATGTCTGAACGACGCTGGTAATGTTGATGCACCAATATCATCTTGTACTTTGACTCATTTCAAAACTGTCTCTGTGGATGATTTGCTCCCTCTTGCGTGGTGCATATCTAAGAAATCCTGTGATCTGGACCACATTCCAGCTCAACTTCTCACTGGATGTCTTGATGTCTTAATGCCTGTTAttactaagatggttaacttgtcactggcaactgcttgtgtaccgaacaatcttaaggaagctgttctcaaaccacttttaaagaaaaaaaatctcgatcacaaggatttcaaaaactatcgtcctgtttcaaatctgagttttttgtcaaagcttattgaaaaggttgttgctatccagctgtcaaattatctgcaggataatcatttacatgaaacactgcaatcggcctacaagaaatttcacagcactgaaactgctcttatcaaagttcataatgatattgccaccgccatcgacgatggactttcagttatcctggttcttttagatctatctgccgcgttcgatactgtggaccatggaattttgttaacaagactgtcaatgcgttatggaattcgtgatagagcCttggaatggtttgtttcAtatttgtcagatcgcacgcagtttgttaAATTGGATGGTTCCTCGTCAGAGTCAATACATCTCCCCCAGGGTGTTCCCCAGGGATCAGTATTGGGTCCGAttctatattcacttTacacgtctcctttgagtgatattgctcatcaacatggcatgaaatgtcatttctatgctgatgattcgcagttctacgtttcttttaaaacttgctgtcttaaTgacatggaatccagtaagtctaaaatggaagcGtgtgttcGagacattgacgtatggatgctttgtaatcgtctgaagttaaaccaagacaaaaCTGAAGTGTTAATTTTCTTGTCGCCCTATCGTCCAAGGCCAAGCCTGGATAATTTGACGATTGTGGATAAAATTGTGGCCTGTTCACCCATGGCTAGGAACATTGGTGTCGTATTTGATAACTCTTGGTCTATCTATGGTTTCTCATTGAAGAACATCCTGACAAAGTGTGACGAGGAAGGTGGAGACCCTTACCTTGCGTTGCTGTCGTACAGAACAACACCTATCAGCCACCACCTGGACTCACCAGCACAACTGCTAACCAAAAGGAAGTTCAAAACACTGTTGCCGATGTCAAACCGTGCAAGTTGCACAGCTGATTCAGGAGACGTTAAGGAACAGTTAAAGAAGCAGCAGGAGTATTATGGTCAGTACTACAACCAGAAAGCGGGTCCTGCCCTGAAACCACTCCACCCAGGTCAACCAGTACGAGTACTCGATCACCAAACCCAGACCTGGCAACCAGGAACTGTCCTGAGAGCAGCAAAAGAACCAAGATCGTACATAGTCAAGAACGACACCACGGAAGGCGTGTACCGCCGCACAAGATCACACCTCAGGCCAGACACAGCGAGATTACGCACACACAACCCTCCACCAGCAGACGTACCTGTCCAAATTATGCCAGCAGCATCGCCATCCAGCAACCATTCACCTGCCAACACTGTTGATCAGCTGCCAGGAGACAGTACAGTACCTGCACCATCTACAGGGATTTTACCACCCCCAGGATCAAGTGGCGGATACATGACCAGGTCCGGACGCACAGTGAAGCCACCGGAAAGACTGAACATTTGA

Transcript

amic_s0108.g16.t1

GGGACTGTCGGCAACCCAGCATGGATGGGCTTCCTGGGGCTGCTACGATGTTAAATTTGACATTGACCGACTTGTCCTTAAAGGAAACCCTCAAGGTAGCTGCACCAATGTTTTCTATCTCAGAGCCTCCATATCCTCTTAAAACGTTCTTACATGGAAGGATGGTAATTGGAAAGGGGAAAAGTTGGAGGTCAACTGGAGTTCGTGATGATTTGGAGTTCTTACCTGAAGGAGAACTGAGCAATGTCCAGCTTTGTGCATTGCACATGGAAATGACAAATACTGAGCAGCTCCTTGGTTCTATAGGCCTGGTTGCGTACAAAAATGTCAACAGTTTGAAAGATGCAAACAATGTGTTACGAGGTTATGGCCCTGAATCCTTCAAGGAAGACAGACTTACAGTGCAAAAGAAGGCAGGACAGCAAACAGAAATAGGAAAGCACAATATCCATGTTCGTTCAATGTCAGAAAAAACAATTTTATTGGATTTTAGAGGGTTGAAAAAAGTATGTACTGTCAACAGTGATGAAAATGATAAAGTCTCGTTAGTCAAACGCGTTTTTCAAACACATCTACAGACATCCTCCGACTCTTTGGCACACGCTATTGTATCACTGCAGCGGTATGATGCAGAATGGGAAGACCTTGTTGATATCGACATGGCTCAAATCAAACACCGCGATAAAATAAAAGTGCAGATCATAGACAACAGGGATCCAGACAACAGCCGAAAATCTTCAACACGTACAACAGATGGAACTTCTGCAGCTGGTCTGGATAGTCCTGCATCGGTTGAACGCGTTAATAAACCTGGTGTCGGCGTGGAACAGTTGATCAAAAACCTGGAAGATCAACGAAGAGCTCTGGATTACAAATTCAGCATCTCAAAGGCAAAATTGGAATCCCTTAAAGTCGCTCCAAGGGACAGAGGTCTTGCAGGAAGGTACTCAAATTTTACCTGCAGCAGTTGCCATTACAAAGGTCATCGAATCAACAACTGCATGCTGCAACCATGCCGAGGTTATTTTGAATGTGGCCAGCTGTCATTACACCGAGAACATAGGGATGATGTGAAAAAGGCTGAAGCTGAAGTAAGAGAAGTTCAGAAAGAGATTAAAAGAAACATGGAAGAAGTGGAAAACTACAAATTGCTTAAGGAAAGAACAAGAACCAACTTTTTTGCTGTCATTAGAAAGAAGCTGCAGTGCTGTAATCCCATCAAGTATTCAAACAGAACAACACTAGACAATGATCTAAGAGTTTTGGCTTCTGCATGTAATCACAGGGTTCCTTCAGACAGAGCAGATTTAGAGCAAATAATCGAGGACTATAGAAATAAGGCAAATAGCATGAAGTCTGTGCAAAGTGTTAATGTACATGATATTTATGGTAACCACAGTGTGCTCCAGAAACAGAGTGTGAGCCACCATTGTACATCACCAATAACAATGCACATTTCTATGCCCCATTCACCCCCTTACCATGGAACTAGAAGTCCAGTACCATACATGCATCATAGAACCCCAAGCCCTGGTCCCCAAACTCAGTCACCATATATGCAACACTCAACTTTAAGCCCAGGTCATCAAAGCCCAGTGTGGCACTCTTCTGCTGGAAATGTGAATTACAGATGGCAGAATGCCTCATCTGTTAGAAATAGGTCTCCACACTATTATTCTACACCAAGGAGAGGGCATCACCAGAGACCACAGCAGACACATTTCAACCAGTCTACCTGTAATTATAGAAAACGCCAACATGACCATGACCATCTTTCAAAGAAAAAACTTAAGTATGACAGCAAAAGTCGTGGCAGAAATTTCAGGGAATCTCTTAATGTGGTAACTGAAACTAAAACAGCTACCAAAATTGGGTCAGATGATGAAACACAGGATGATTCTCTAACAGAAAGCCCTGCCCCTAAAACAAGTAGCAAAGGAGAAATAAAAGTTATCGTGGAAGCTGAAGCCGTAGAAAACAACTCAGAAATAGCTAGAGAATATGGACTAAGCGAATCCATGGTGCGACGCTGGCGAAGAGACCAGGGGACTATTCTTTCTGGCGAGCTTAAGATGTCTGCAAAACGTGCAACGATGGGCCGTTTCACTCCCAAGTATCCCAAACTAGATCAGCAAGTGATGGAGGGGTTTTCAGAGCAGAGAGACCAAGGTATTGCCGTGAGTGGATTAATGCTTCGTCTTAAAGCCAAAGAATTGTCAGAGGATCCTTCCTTCAAAGCTTCAGGTGGGTGGTTTTATTACCGTTCGTATGCTGTTGCAGACTGGCGTGTTGGAGTTTGGAAGTGTGTTTCATCTCTCAGCAGAGTTTTTAAGCCTGGGAAGCCGCTCGCTCGCCCGATATATTCTTGGAGTAAACATGGTTACTCTTGTAGTTATCTTCCTTCGAGTGAAGACCCCGCTATTTGTATGGATGAGGAACTGAACCCTGGTCCTACCTTGGTGAAACCTGTGGTACACCACTTGCTGAGTGAGGAACATGGTATTTCTCATTACATTTCTAACTCGCATCGTGTGGCTGTTCGCCATGTTTATACAAGAGACAAACTCATTGCTTTATGCCCTTTTCGGATTAATACCTTCGATTGGCCTCGAACCCGTTACATGAGGAAGCCTTATTTTCAAAAGAAGATGGTCTCTTCACGCAAGTTAAAATCTGTTGACTTTGATGCCATAAAAAGTTGCATTGAGCGATCTGCACTCCTAGCACATGATCCTACAAACATCTCCCAATGCGTCAACTTGTATAATTCTGAGTTATCTAGAATTTTGGATTGCCATGCCCCCTTGACTACACGTGTGGTTACCATTCGACCAGCTGCGCCATGGTATAATGATGAGATCAAGATTGAGAAGAAGAGAAGAAGGCAATTGGAGAGGCGATGGCGGACTAGTGGATTGCTGTCTGACCGCCGAAGGTTCACAGAGCAATGTCGTTTAGTCAATCAATTGCTATGGTCCTCTCGATTTAGATTCTACTCGAAAGTTGTTAATGAAAATCAATCCGACCAAAGAAAGCTTTTTAGTACTGTCGACAAGCTGCTTCATAGGACACCTGATGTGATTTATCCGCCGCATACCAATGCAGAAGAGCTAGCTAGGCGCTTTATTACATTCTTTGCTAATAAGACTACCACAATACACCAGGGCCTAGTTCAACGATGTCTGAACGACGCTGGTAATGTTGATGCACCAATATCATCTTGTACTTTGACTCATTTCAAAACTGTCTCTGTGGATGATTTGCTCCCTCTTGCGTGGTGCATATCTAAGAAATCCTGTGATCTGGACCACATTCCAGCTCAACTTCTCACTGGATGTCTTGATGTCTTAATGCCTGTTAttactaagatggttaacttgtcactggcaactgcttgtgtaccgaacaatcttaaggaagctgttctcaaaccacttttaaagaaaaaaaatctcgatcacaaggatttcaaaaactatcgtcctgtttcaaatctgagttttttgtcaaagcttattgaaaaggttgttgctatccagctgtcaaattatctgcaggataatcatttacatgaaacactgcaatcggcctacaagaaatttcacagcactgaaactgctcttatcaaagttcataatgatattgccaccgccatcgacgatggactttcagttatcctggttcttttagatctatctgccgcgttcgatactgtggaccatggaattttgttaacaagactgtcaatgcgttatggaattcgtgatagagcCttggaatggtttgtttcAtatttgtcagatcgcacgcagtttgttaAATTGGATGGTTCCTCGTCAGAGTCAATACATCTCCCCCAGGGTGTTCCCCAGGGATCAGTATTGGGTCCGAttctatattcacttTacacgtctcctttgagtgatattgctcatcaacatggcatgaaatgtcatttctatgctgatgattcgcagttctacgtttcttttaaaacttgctgtcttaaTgacatggaatccagtaagtctaaaatggaagcGtgtgttcGagacattgacgtatggatgctttgtaatcgtctgaagttaaaccaagacaaaaCTGAAGTGTTAATTTTCTTGTCGCCCTATCGTCCAAGGCCAAGCCTGGATAATTTGACGATTGTGGATAAAATTGTGGCCTGTTCACCCATGGCTAGGAACATTGGTGTCGTATTTGATAACTCTTGGTCTATCTATGGTTTCTCATTGAAGAACATCCTGACAAAGTGTGACGAGGAAGGTGGAGACCCTTACCTTGCGTTGCTGTCGTACAGAACAACACCTATCAGCCACCACCTGGACTCACCAGCACAACTGCTAACCAAAAGGAAGTTCAAAACACTGTTGCCGATGTCAAACCGTGCAAGTTGCACAGCTGATTCAGGAGACGTTAAGGAACAGTTAAAGAAGCAGCAGGAGTATTATGGTCAGTACTACAACCAGAAAGCGGGTCCTGCCCTGAAACCACTCCACCCAGGTCAACCAGTACGAGTACTCGATCACCAAACCCAGACCTGGCAACCAGGAACTGTCCTGAGAGCAGCAAAAGAACCAAGATCGTACATAGTCAAGAACGACACCACGGAAGGCGTGTACCGCCGCACAAGATCACACCTCAGGCCAGACACAGCGAGATTACGCACACACAACCCTCCACCAGCAGACGTACCTGTCCAAATTATGCCAGCAGCATCGCCATCCAGCAACCATTCACCTGCCAACACTGTTGATCAGCTGCCAGGAGACAGTACAGTACCTGCACCATCTACAGGGATTTTACCACCCCCAGGATCAAGTGGCGGATACATGACCAGGTCCGGACGCACAGTGAAGCCACCGGAAAGACTGAACATTTGAATGAACACTAATGTTTCATTAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005883 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03221 all species →	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0108.g16.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0108.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.