Detailed information of amic_s0108.g16.t2 in Acropora microphthalma

Genomic Location: sc0000108_pilon:630553...655941
NR annotation: XP_044163846.1, uncharacterized protein LOC114950618 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q95SX7Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
Q9NBX4Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
P21328RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000016 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →
RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03221
all species →
HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006600
all species →
DomainHTH CenpB-type DNA-binding domainInterproscan
IPR000477
all species →
DomainReverse transcriptase domainInterproscan
IPR043502
all species →
Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR009057
all species →
Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46670
all species →
ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0108.g16.t2. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0108.g16.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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