Gene detail

Detailed information of amic_s0110.g23.t1 in Acropora microphthalma

Genomic Location: sc0000110_pilon:591189...605554
NR annotation: XP_029200597.2, glutathione synthetase-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0110.g23.t1

GGTGCGCTCCTACTTGCCTATTTTTCTACTTTTTCTGCAAATTGTGATCCTTTTCTTTTTTTTTTTTTCCGATCGTTCGCCAATAATATAGGCACAAGGGAAAGAAAATTACCATATACTGACTGCAAACGCCATCTAAAGAGGTTTTTCATGAAACCGGTTTCTTGACGACTTGCTGTCAAACTAACGATTCGCCGAAAATAAACTTGGACTCGGTCCAAGCTTTGGTCGCGTTGTGTGAGTGTGCAAAAAAAAAAAAACAGTAAAAAGAGGGAACCCCTCGCGTAGACATCATCGCTAGCCGCGTTTGATTGTGTGAAGCACCTAGTGCCTACAAACGATACAATCCTGGTTATTCCCTTCCACTGGATCAAATGAAAGTGGTTCCATAGGTTGACAATGTCGTTTTCGTATATCAGGGAAAAGGAGCTTACTCAAGATGAAGTAAAATGGCTTGAAACTGAAGCTCGAGATTACTGCGTATCACATGGAATGGTTTATAAGGATTCCGAAGGAAGGCTGCAGCATATTCCTGTCACTCTGCTTCCATCACCGTTTCCTCAAAAGCAGTTCACAGCTGCGAAAGAAGTGCAGTGCAATTTTAACCTTCTTGTGCACAGAGTGTCCCAGGATTACGAGTTTACAAAGAAGGCGCTGGCCGGTACTTTGGCTGCTGATCCTTTCACATCAAAACTGTTTGATATTTATGACAAAGTGTGGCAACAAGGAAACGTCCAGCCAATTTCATTGGGCATTTTTCGTTCAGATTATTTGATTGACAAATCAGATGGTTTACACAGATGCTCCGATTACTCTGGTGAAGTTACACCGAAGCCAGCTAATGGCTCGATATCCATAAAACAAGTTGAAATGAACACCATATCTCTCGGCGGAATCACCTTTTCTTGTTTTGTTCCCAAAATGCACAGATATCTTTTGCAGTTGATTGGCCAAGAGACAAGCAAGGTTCCCCTGAATAATGCTTTGGATGAGGCAGCTGGCGCTCTTGTTAAGGCCTGGGAACTATATGGATCTGAAAGTGCTGTTATCATGTTTGTCATTGTACATGGTGAAGTCAATATTTACGACCAAAAGATGCTAGAATATCGCGTAAGAGAGAGAAACCCTGCGGTGAACGTAATTAGACGAAGCCTTAGCGACATTTATCACCGAAGCCGAACAGATGACAAGAAATGTTTATTTGTGGATGGAATGGAAGTTGCAGTGGCTTATTTCAGATCAGGTTATTCTCCAAATCACTACCCGACGGAAAAGGAATGGTCAGCTCGATTGACAATGGAATTGACTCGATGTATTAAATGCCCAACAGTGGCGCACCAGTTAATGGGAACGAAGAAAATGCAGCAAGTTCTAGCTGAGCCCGGAATCCTGGAAAGGTTCTTACCAGATAAAGAGTCTGTCGAGAGAGTGAGACAAACATTTACTGGCTTATATACACTTGACTCGGGACCAAAAGGAGACCTCAACATGGAGGGCTGCCTCAAAACGGTTGAAAACTGTGTCCTCAAACCTCAAAGAGAAGGTGGAGGTAACAACATGTATGGGGAAGACATAAGACTCACGTTACTCAGCAAACCAGAGAACAGGTCACAGTACATACTGATGGATCGCATTCAGCCAGAAGTCAACAACAACTTCCTTGTGCGTCAGGAATTCACAAGTATACACTCGAGTGGCGTCGTGCCTGAACTTGGAATCATGGGTGTTTTTATCAGTTGCGGAGATGAAATACTGTTGAACAGAGAGAGTGGTTTTCTTGTCAGGACGAAATCGACCGAGCATGCGGATGGAGGTGTATTTGCTGGCAGGGCTGCCTTTGATAGTCTGTACTTGGTATAGGCCAGCAGTCGTCATGTTTGAGATAAACTTACGTTTTCTTTGTTACTTACGTGGGCACATTTTCTATCATCATAATTAAAATTTCATATTGATGAAACCCTTTTTTTCCTGGAAGAGATAAGGTTTATGACTAACAGATAATTTCAAAGCCCTTTCAGTGTTAAATTCAATTTGGGTTGTTATAGTAAGTGGAGAAAACGCCAGAGCTTCCGTCTCAGTTAATACGGAGTACAACTGGCTCTACATTTGAATTGTTAATTCAAAAGTGATGATTGTTTTCGGGTTGTGTTTAGATTTGTAACTGTTGAAGATGTTTAAATATAgaccttcagattggaatacgaggatgactaggaatacgagttttccgttctgagcgcgcgctttgggtttggagggcgaaaattttcggagtgcgcgtgctcagattttaaacttgtattcgtctgagatcctcgcactccaacctgaaggtcgctaataTTACAGTTAAGGCAAGTCATCAACCATGGCAGTATTGCACTTGTTATTCATATATTGCATAGCATTAGAGTAAATCCAATCACGAACGATCTTTTGTTAATATGAGATGCTTACGTAACTGGAAATGATGAGAGGGGAATTCAAAGAGTAAAAGAAATGGAAGAAAAAATTAAAAGCATCATACCATGTTGGTGAATTGTTTCTTGGATTAAAGTGCTTCAATGATGAAAACGAGCAAAAGGATTCTCTGCTCTTTTTACAATACAAAAATAGAAGGATGGGTTACTTACCCGTTGTGCTCAATTTTAAGGCGACAATCCATCGGAAGTCAGTCTGGAATTTCGAACTGTCGAAATTTAAAAAAAAAAAAGCCACAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35668	Glutathione synthetase OS=Xenopus laevis OX=8355 GN=gss PE=2 SV=1
O22494	Glutathione synthetase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=GSH2 PE=2 SV=1
Q5EAC2	Glutathione synthetase OS=Bos taurus OX=9913 GN=GSS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03917 all species →	GSH_synth_ATP	Eukaryotic glutathione synthase, ATP binding domain	Domain	Interproscan
PF03199 all species →	GSH_synthase	Eukaryotic glutathione synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005615 all species →	Family	Glutathione synthase	Interproscan
IPR004887 all species →	Domain	Glutathione synthase, substrate-binding domain	Interproscan
IPR037013 all species →	Homologous_superfamily	Glutathione synthase, substrate-binding domain superfamily	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR014709 all species →	Homologous_superfamily	Glutathione synthase, C-terminal, eukaryotic	Interproscan
IPR014042 all species →	Homologous_superfamily	Glutathione synthase, alpha-helical	Interproscan
IPR014049 all species →	Homologous_superfamily	Glutathione synthase, N-terminal, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11130 all species →	GLUTATHIONE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004363 all species →	Molecular Function	glutathione synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043295 all species →	Molecular Function	glutathione binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21456	GSS; glutathione synthase	EC:6.3.2.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.