Gene detail

Detailed information of amic_s0110.g3.t1 in Acropora microphthalma

Genomic Location: sc0000110_pilon:65626...107336
NR annotation: XP_044176235.1, uncharacterized protein LOC122947280 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0110.g3.t1

ATGAAAGCAATTGGGAGGGCTGATCAAGtggatggtggagagaagagggaactttgtcagccttctccagaacataaaaagccaccccagctcagttgcaagctgagagaagctggtgatattccaacattcacaaaaaagtggagtgatgatcatgtgccaattgatattttactattgactgtggagagcggtgatttcttgagctgtttctacttcctagatcaacctttgaaatgttacaaaaaggagatcggttttgtgtactttggatacatgggaggtgtcagcaaccaagaaaaattaaaggttgcattgatgaattgcactaagggagctgcagccccaggaggctctttgacagcagttctgaatgcagttagagtcttgcaacctaaggctgtattttcagtgggaacttgcataagtttagacttggagaaggccaaattgggtgatgtagtcatatcctcaaagctaacaactacagagggattcaaaactcctggtagcccacttcttaggaatcttgttcaagatgctccctatggttggtgtgctccattgaaaaatccagaggaatggggagttaaagtacattgcaatggtgatatcctgagccagtcactgagagataagtttcattgtgatgacatttttgtgaaatatcctggagcagttgcaattgagactgaaggcgaaggtgtttatgctgcagcgtatgatgcaaacattgaatgggtgatagtgaagggtgtggctagttattttcaccaaagccagtctgcaacttcggaatggatgtcttttgcaagtaccatggctgcctctgtggtggccaagatgctaagtgatccaacaattttccgggaatggccacactataaccaagGTGCGGTTTCCATGCAAAATAACCCTGGTAGTTCCACATTCCTAGATAGTACTCCTCCTGCAACAACCATCAGCGATGGACCTGGAACTCGTGCACCAACAAACGAGGGTAAGAACCCTGAGAAAATGTCGTTCCATGGAGTTGCAGGTACTTCCTCTGGTGGAGGAGGAGCCGTGGCTCCTGTGGCACCAACGCCGTCCTCAAAGCATCCGTTGAGAGAACTCAAAGAAAAATGGACTGCTAAATACGTCAATTTTTTGGAGTTTGAAGGTTATTCTGTGCAAATTGTTGGTGGCAAGCATTTCAATACACCGGACGGAGAGTTTGTGGAATTGAAGAGCGGCACTCAATATAAAATTCTTTTGAAAAACTCTCATCCTTATGCTTGCAATGTGGATATTTCAATTGACGGCTATGATGTTGGAGGCTGGATCATGCAAGGTGACGAGCAACTCGCCCTAGAAAGATCAGCTTATGAAGCCAAGAAATTCACCTTTTATCGCGTGAAAAAAGCACCAAAAGATTCAGGCATTGATCCCAGCCGACCTGAGGAGAATGGTGTGGTAAAGTGTGTCTTCACTCCAGAAGCCTTCGTGGATATTCAAGTGAATATCTCAGGATCGTCTCAGCCTCGGACGATAAGCTTCGCCCCAAGTGCCACTGTCACAGTGGGTGATTTAAAGCAAAAGATCCAACAACAGTTGAATAAATCACCTGATCCCAATCAGATTCTTACTCAGAATAATAAAGCGTTGAAAAATCACATGCCAGTGAGACGTGTGATGGAATCGTCTGAAAGCTTAATACTAGTCGATGTTGAACTAGATGTTACCGTTAAGGCGTCAACAAATAAAATATTTCAAGTCAAGATCCGACCAGGTGAAGCAAAAATCATTGATTTGATGGAAAAGATAGAAGCAGAGCTTGAAGTGCCCATCAAAGATCAGAAGCTATTCCATGGACAGACCCGATTGTCCGACAATCCACGCAAAGATCTTCCCGAGAAACTGATCTGCAGTTTAAATCGCACCGTAGTTGTAAATGTCCCTGACTACATTGAGATAACGGTAGAAAACTCGGCAAGTGGGGAATCAATTACATTGAAGATTGACAAGGAAAAACGTTTAACTGATCTAGCACAAAAAATACCATCATATAGAAACATGGATGATAACCAAGAAGCCATCTTCCTCGTGGACGAAAGGGAGCTCTCTCCTGTGCAGGATACTGGAACACTAACAAGCCTTGGAATCTTGTCAGGCTCGCGGGTCAAGTTTGTGGCGAGAGTCCTGTTCATCAAAGTGGTCATTACCGGTTTGCCTCAGGGCAAGCTCACTGTCCAATGTAATCCTGGGGAGACATTCCAGGATCTCTTAAAGCACGTTCAGTCAAGGACGAAGTTGAAGGAGATAGGCAATGCTACATTTTCAACGAAAGGCAGGAATTTTAATCCCAAGAAAGACGTGGATACGTTGCAAGGCTACGGCATAGAGCATCGATCTATTATTATGTTCAAGAAGGAAGAACCACGCTCGAGCAAAGACCAACAGAGGGACCAAAGTTTGAAGGAAAAGGAGGAGGACGAAGAAGTAGGTGCGTGGTTAGCACTTCCTGATGGAGAGAGTATTGACAATGAAGAAGCGAGGGCTCCTCTAGGATGGCCAGTGGTCTCGATGCGAGTTCCTGAATTGCATGCACCTGAAGGAGCGAGTATTGACGATGAAGAAGTAAGGGTTCCTAAAGAATTGCAAGTCTCGAAGGGACTTCCTAAACCCAAAGGAATGAGTCGTAAAAAAGAAAAGTTTTCTTGTGCTGTTATACCAGCAGAATCCAGTCGCGTGCTGGCTAAAAAAGACCCCTTATGGAGAGCTGGTGGAACAACCTTACAAGGTCACAGCTATCAGCACTTTGAACCCACCGATGACCCCATCACAGCCGACCCATCTAAGAAAGTTGAACTGGTGCTTAGGCTGGTGGCAAGGGAAGACGAGCCAGACGTTAAGTTTCCCTCAGATCAGTGTACTCCATTGTCGACCCTGCGCCCACCGCCTGTTCCTGAGTGA

Transcript

amic_s0110.g3.t1

TGGAAAAATTGAGGAAGTCACATCTCGTTTCAAGTTCTTTGATCGGAATACAATAATCAGTCCTCAAAATCTCACCCCTTTGGAAGAAACTATTAACTCTGGAAGAAAGAATGAAAGCAATTGGGAGGGCTGATCAAGtggatggtggagagaagagggaactttgtcagccttctccagaacataaaaagccaccccagctcagttgcaagctgagagaagctggtgatattccaacattcacaaaaaagtggagtgatgatcatgtgccaattgatattttactattgactgtggagagcggtgatttcttgagctgtttctacttcctagatcaacctttgaaatgttacaaaaaggagatcggttttgtgtactttggatacatgggaggtgtcagcaaccaagaaaaattaaaggttgcattgatgaattgcactaagggagctgcagccccaggaggctctttgacagcagttctgaatgcagttagagtcttgcaacctaaggctgtattttcagtgggaacttgcataagtttagacttggagaaggccaaattgggtgatgtagtcatatcctcaaagctaacaactacagagggattcaaaactcctggtagcccacttcttaggaatcttgttcaagatgctccctatggttggtgtgctccattgaaaaatccagaggaatggggagttaaagtacattgcaatggtgatatcctgagccagtcactgagagataagtttcattgtgatgacatttttgtgaaatatcctggagcagttgcaattgagactgaaggcgaaggtgtttatgctgcagcgtatgatgcaaacattgaatgggtgatagtgaagggtgtggctagttattttcaccaaagccagtctgcaacttcggaatggatgtcttttgcaagtaccatggctgcctctgtggtggccaagatgctaagtgatccaacaattttccgggaatggccacactataaccaagGTGCGGTTTCCATGCAAAATAACCCTGGTAGTTCCACATTCCTAGATAGTACTCCTCCTGCAACAACCATCAGCGATGGACCTGGAACTCGTGCACCAACAAACGAGGGTAAGAACCCTGAGAAAATGTCGTTCCATGGAGTTGCAGGTACTTCCTCTGGTGGAGGAGGAGCCGTGGCTCCTGTGGCACCAACGCCGTCCTCAAAGCATCCGTTGAGAGAACTCAAAGAAAAATGGACTGCTAAATACGTCAATTTTTTGGAGTTTGAAGGTTATTCTGTGCAAATTGTTGGTGGCAAGCATTTCAATACACCGGACGGAGAGTTTGTGGAATTGAAGAGCGGCACTCAATATAAAATTCTTTTGAAAAACTCTCATCCTTATGCTTGCAATGTGGATATTTCAATTGACGGCTATGATGTTGGAGGCTGGATCATGCAAGGTGACGAGCAACTCGCCCTAGAAAGATCAGCTTATGAAGCCAAGAAATTCACCTTTTATCGCGTGAAAAAAGCACCAAAAGATTCAGGCATTGATCCCAGCCGACCTGAGGAGAATGGTGTGGTAAAGTGTGTCTTCACTCCAGAAGCCTTCGTGGATATTCAAGTGAATATCTCAGGATCGTCTCAGCCTCGGACGATAAGCTTCGCCCCAAGTGCCACTGTCACAGTGGGTGATTTAAAGCAAAAGATCCAACAACAGTTGAATAAATCACCTGATCCCAATCAGATTCTTACTCAGAATAATAAAGCGTTGAAAAATCACATGCCAGTGAGACGTGTGATGGAATCGTCTGAAAGCTTAATACTAGTCGATGTTGAACTAGATGTTACCGTTAAGGCGTCAACAAATAAAATATTTCAAGTCAAGATCCGACCAGGTGAAGCAAAAATCATTGATTTGATGGAAAAGATAGAAGCAGAGCTTGAAGTGCCCATCAAAGATCAGAAGCTATTCCATGGACAGACCCGATTGTCCGACAATCCACGCAAAGATCTTCCCGAGAAACTGATCTGCAGTTTAAATCGCACCGTAGTTGTAAATGTCCCTGACTACATTGAGATAACGGTAGAAAACTCGGCAAGTGGGGAATCAATTACATTGAAGATTGACAAGGAAAAACGTTTAACTGATCTAGCACAAAAAATACCATCATATAGAAACATGGATGATAACCAAGAAGCCATCTTCCTCGTGGACGAAAGGGAGCTCTCTCCTGTGCAGGATACTGGAACACTAACAAGCCTTGGAATCTTGTCAGGCTCGCGGGTCAAGTTTGTGGCGAGAGTCCTGTTCATCAAAGTGGTCATTACCGGTTTGCCTCAGGGCAAGCTCACTGTCCAATGTAATCCTGGGGAGACATTCCAGGATCTCTTAAAGCACGTTCAGTCAAGGACGAAGTTGAAGGAGATAGGCAATGCTACATTTTCAACGAAAGGCAGGAATTTTAATCCCAAGAAAGACGTGGATACGTTGCAAGGCTACGGCATAGAGCATCGATCTATTATTATGTTCAAGAAGGAAGAACCACGCTCGAGCAAAGACCAACAGAGGGACCAAAGTTTGAAGGAAAAGGAGGAGGACGAAGAAGTAGGTGCGTGGTTAGCACTTCCTGATGGAGAGAGTATTGACAATGAAGAAGCGAGGGCTCCTCTAGGATGGCCAGTGGTCTCGATGCGAGTTCCTGAATTGCATGCACCTGAAGGAGCGAGTATTGACGATGAAGAAGTAAGGGTTCCTAAAGAATTGCAAGTCTCGAAGGGACTTCCTAAACCCAAAGGAATGAGTCGTAAAAAAGAAAAGTTTTCTTGTGCTGTTATACCAGCAGAATCCAGTCGCGTGCTGGCTAAAAAAGACCCCTTATGGAGAGCTGGTGGAACAACCTTACAAGGTCACAGCTATCAGCACTTTGAACCCACCGATGACCCCATCACAGCCGACCCATCTAAGAAAGTTGAACTGGTGCTTAGGCTGGTGGCAAGGGAAGACGAGCCAGACGTTAAGTTTCCCTCAGATCAGTGTACTCCATTGTCGACCCTGCGCCCACCGCCTGTTCCTGAGTGAAGGGATCTCCTCGCACATTTGGAGGAGATAAGAAGAGAAACCGTCCCTGGTCGGAGCTTTTAAAGTTTCCTACAGTTTAGTGTGACGCTTTTTGATGATAACCTTTTTAATCTCCAAGTACTACAGACGTTAAGAAAGAGGTGCTCTGATGAGTCAATAAATAAGTTTAACAAGTATATCCTCAAGCTTACATTTGCTATGTTACTTCCGTTACCCACGATCCCACGCGTAGATCTTTGAGAAGGTGTGACCCGTCAAAAAAAAAGATTATGCTAGTTGGGTTTTGATGTACTCTTGTCCAATTGGAGAGCCAATCAATAGTCTCTGTGTTGGTTCCTACCATCTAGCTTTTATTTTGTGACTGAAGTTTTTTGCCTCTTTTTAGCTGAACCACTAAATCGCCGCACGATCATTTGAATAGCTCGATCTCTTCATCACATGTGAAACATTACACCGGAATGCTACTTCTACCTGATATATTAAAGTGCTTTCAAATTTCTGTTCGCTGCTTGAAGTCTACACCAAGGAGCATTTTCTTTTTCAAAATAAAAATTGTCATTGCTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001173 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for amic_s0110.g3.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR035994 all species →	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46832 all species →	5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009116 all species →	Biological Process	nucleoside metabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008782 all species →	Molecular Function	adenosylhomocysteine nucleosidase activity	Interproscan
GO:0008930 all species →	Molecular Function	methylthioadenosine nucleosidase activity	Interproscan
GO:0019284 all species →	Biological Process	L-methionine salvage from S-adenosylmethionine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0110.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.