Gene detail

Detailed information of amic_s0110.g41.t1 in Acropora microphthalma

Genomic Location: sc0000110_pilon:985084...991448
NR annotation: XP_015778252.1, PREDICTED: protein APCDD1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0110.g41.t1

CGATAATGATTGACCCATTTCATACTCTTTCGAGCTGCGCCGCCAAAATGGTTGAACTTACGTTGAAAGACAACAATGTGTTCTGTTCGGGCACCTTCTAAGACTCTCTTTACAGCATTCCTCTGTACGGGATGTTTCTTTGGAAAGATTAACCAGTACAACCAACAAGACGGTGTTTAGCAGGTTGCACATTTGAAGTGGAATTCAGGCCAAGCTGCCATAGTGTATTACCGGCAAACAAAAATGAAGAAAGCGGAGTACAATCTCGCTCTGCTGGTTGTTTGCATGTTGTCAGTGTTCCAGAAATGCGAGGCAAGCCGGGCAAATCAGTGTCTTTCGATTGTGAAGCACGTCTACCACAGCCTTGGAATAAGAAGCCACTTGTCCGACAGCTCAGATATTGCGGGAGAATGGACCTCATCGAACTGTGAGGTCAGACCAGGTCCCCAGTTTTTTACACGGTACATCAAAATTTTGACAAATGGCACATGGGAAGGTTATTTTCATCGCTACAACGACTCAGCGTGTTCCGAACCCAAGCTTAGTCTCTATATGCATGGCTTTTACAAAGTTTACAACGAGCCATTGGAAACAATCAAAGGGAGCAACAGGGCCTTTTTTAACTTTACTGGTTTAGAACTTTATCCTCACAACGCATATGAACAAGAGAAAATAATTAATGTGTCAAGAAAGCATTGCCCAAATACCATACCGCGTTTTGTCAGGAGTGCTGGCTCCAACAAAGGCGTGTTTGAAGTGAACATAAGGGCATTTCGAAAACGGGCCTGTCGCAATTCCTATGGATTCTTAGAATCTGAATTTTCTGCTATCAAACTGGAAACTCGAAGAAAGAAAGGCTCTGACTACGACAGACTTTTCTTTGCTGAGATCCCAACGATAAGAGTAACTCGGAGATACAAACCCAAGGGCTACCAGCTTCCCTTACAAAGGTACGACGCACACAATTGCACCAACTGCATGAAGATTCAGTCTGGTACCGGTTCGCGCCCGCCACAGCTCCCCCGGAAAGAGCGACCCCGTCGATCATTCGTGTTAAACGGAAAGTGGGCCAGCTCAACTTGCGAAACAACCCTCGGAGGAACATTCCTAACTCGTCACTTCAAATTCAACAGCGCCTCATTGAGTTGGGAAGCGCACTACTACTTTTACTTAAACAGCGACTGCAAAAGTCTTGATTTTGAGTTGATTGGCAAGGGCAATTTCACGGCTGGAATCCCGTCCAAAGTTGTAGCTGGAGCCAGAGATTATGTGTTCACAATGACAGAAGCATTCATGACTCCATTCGATCCTGTTACTACTCGACTATTGAACACTCTAAAGTCAAATTCTTGTGGTAAACAAACGTGGGTTACTGGTAAAACTCAAGACCTGACACCCACTGGAGGTTGTGCCATGTATGGGATTTCGCTTCCCCATACTGAATATGATTTACTGAAGATGGAAACGACTACCAAAGGAAGCAAACTGCTTTACGTTGGACAACGTTCCAGTGATCTGTCAGATCCCAACTCTCCGTCAAAAAGAGCTACATCTTTCCAGATTCCGCTGGTAGAATGCTCATCCTTTAACATAAAATTTGTGCCGCCGACAACTCGTCCAACAACCCGACCAACCACCCGTAGAACGCGTTCCCCAATCCTCAAGATAACGATACCTACTCTCAGGCGAAGAGAGACCACTACAAGACGGCGCGGTGATCGAGAAACTACAACTAACACAGTGGACAATACAAATGTGATAACCAACGACAAGACGCCTCTCATAGCAGCTGTTAAAGGTGTTGATAACTCTTCTTCCGGGATGAACTGGCCATCTTCATGTCAGCCAATGCTGATGTTGAGCTTAGCCGCAGTTTTTATTTTTCGGTAGGACCATAGACTGTGAACAAGCCATAAACGCAAACAATTTGTAATCATGATGACAATCAGCAAAGAACGCGATTACCAATGCAAATGTACACGCATTACTAACTCAGACGTGTATGGAAAGTTTCTTTTAAGCCATTGCTATTTGAACCTAAAATCTAATGTAAGGTAATGGGTGCCTTTAGAAGGCAATTGTTTGTTTCGTTTCACCGAACTTTCTTCGGTCCTTTGACTGCGTTAATCCCTAATCACGCCCCTCAAATCATATTTTCTGTTAATTGATGGGTAATATTTTCTTTGCATCTGTCTTTTCAATGTGTGAAAACAAAAGTTAGATCTTACAGCACCATTTTGAGAGTGTTGAAATGTTCTTTATGATGCAATTTATTAAGGTACTCAATTGGATTGTGGTCATATTGAAATCATATTATACGACCTACAACTGCATGTATATATGCCTCCATGGCCATGAGCGCCCCTTCCGTTTATCAGTAACAAACCCCCTAGCGATCAGTGCAAGTGGTACCCGCGACCAATCCTAAAGAAAATTTTAAAATAGAGCTTCTTTTATACTTTGGatttctagtttctaaagaaactgtggtactgcgtcggtgggagagagaaaaacaaaaacttggttttatcaaacgagttgatataggttgaattaccaccgtgaaagatttagaaagctgccgtttcgagcgttagcccttcgtcagagcgtttgagtcattgtttgctctgacgaagggctaacgctcgaaacgtcagctttctaagtctttcacgctggtaattcaacctttatcagcttgtttgataaaaccaaatttttctttttcTTTTATACTTTCATTCTCTTGTTCATTCTGAAATAACTCAACAGCTCAGGAAGGCAATGTTCGTTTCAAATTATTGAAACTAGTTTTTTTAATAATAAAAAAGGCGAAGATTTTCTTTTCCGGTTGCTTTTCATTTTGCTAGTATAGAGACACTGTTATTTAATCGTTAACCGAGCACGTGTACTAAATAGAATTTATTTGTATAAAACTCAACAATGCAAAGTTTTCGAGAACACAACTTAGTTTTTTAGTAAGCAAAGATTAAAGAAAGGAATTGATTTAAATGCGATTCTGTAGACAGATTTAATTACATCCAAAATAAAATAATTAAATGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R2J4	Protein APCDD1 OS=Pelodiscus sinensis OX=13735 GN=APCDD1 PE=2 SV=1
Q5R2I8	Protein APCDD1 OS=Gallus gallus OX=9031 GN=APCDD1 PE=2 SV=1
Q3U128	Protein APCDD1 OS=Mus musculus OX=10090 GN=Apcdd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14921 all species →	APCDDC	Adenomatosis polyposis coli down-regulated 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042425 all species →	Family	Protein APCDD1	Interproscan
IPR029405 all species →	Domain	APCDD1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31021 all species →	ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25812	APCDD1; protein APCDD1	-	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.