Gene detail

Detailed information of amic_s0111.g33.t1 in Acropora microphthalma

Genomic Location: sc0000111_pilon:585827...595398
NR annotation: XP_015770926.1, PREDICTED: uncharacterized protein LOC107349309 isoform X4 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0111.g33.t1

CTGAGTCCCAGTGCCTGTCCTCACCTTCGAGCTTATCGTGTCCAAATGTTACGCAGGATACGACCAATCCGAGATGGAAGGTGGGGATAAGAAGTCTATCTATTTGATCAGAGAAAACTTTGAAGACAGTGTGTGCAAGAGAGGCATAGCATCTGCTGTCTCTTTCCAAGAGGAAGTGTTTTTGTTGACTTCATCTTCTGTCGTCAAGGAAGTCAATCCAAATGAGAAGCCAAAAAAACTCATAGCCCAACGGTTTTCGCGAAGAAAATTTGGTGACTATCAAGCGGAGGTTTCAATCTATACGACGATCGATGAATTCACATTTCTTAAGATAGATAAGGAATGCGAATTTAGTAACGTACATAAAGGTTGGTCAACCAGTCACCGTAATTTCAATGTCTCCGCACCATCTTCCGAAACAAAAGCGTTGGCAAAGAGTCCGTTTTGTGAAAGCTTGAGGAAGCAAAACCGGGTTAAGCCAGTTGCGTTGGAGTGCAATGGAAACAACACGATCATCGAAGTGATCACTGAACCACCGATAGAGAGGACCTCAATTCTTGGTGCTCCGATTTTCCCTGAGACGAAAACTACCAACACGATGAAGAGTGTCAAAGTTATTGGCGTAGTAGGATTGAGCAGCGAAGAAAAGCTTTGTTCATACTACTTGAATCACAACGTACTTGATCTGGTATCTTCTAAACAAAAAGAGATGCAATCTAAACGAAAAGGAGGAATTGTTAAAACTCCGATTGAACAAGACACTGTGCCAGATTCAGGACAAACAACAATTTCTGTGGATGTTGCAGCATCTCAAGGGGCAACCAAAATCATGGGATCTGATGAAGAGCAGCAGAATTGTCAGGCGCATGCCCTCATACAGTGTAAACTTGGCTTATGCCTTTGTCTTCAGGGTCAAGAAAAGGACAAGGGCCTTAATCTCATTCGGGAAGGAATCGAGCTGAAAAAGAAGCTTCGTGATCCTGTTTATTTGGCCGCTGGACATTGTGATCTTGGAAATGCTTATTGTATACTGGGCGACCATCAGAAAGCCATCGATATCTGGGAAAAAGAAACGTTTCCCATTTACCAAAATCAACTGGGCGAACACCCCTGGACTGCCACGATTCTGCACTTTATAGCTGTCTCGTACACGGCGCAAGCGCAGAGAAACGTTGATGGCGCTGTAAAGAAGAGCAGAGACGCCCTTAAAATGCGAAAGAAGTTGTTGGGTTTTCATCAGGAGACTGCACGGTCACATGTCTTACTCAGCGACGCGTTAGAGCTTCAGAACGATTTCAAGTCAGCTTTAAAGGAGCTTGAAGAGGCGCTGAAAATTCAAAAAGAAGTGTTGGGTGAAAACCATAACAGCACAAAAGATACACAAGCAAAGATGAGGCGAATTATGAGAGCAATCATGCAAGATTCCAACGGAAAAGTACATATGAAAGGTGCAAAGTTTGAAACCTCATTTGTGACATTTAATTATACTCATGCGATAAGCAAAAGGAGATGCAGGAACTTAGCACGGATTACTGATCATGACATTTGTCATTATAGTTCTACAAAGGTAATTCATCTTGCAAGGCATACTAGACGACAAACCTTCCACCCCACCTCTAAGAACAACAAGCAGAGCAAAATAGAGCGCATGCTAGCTCGTTGAGTCTAAAAAACCCCGACCAAAATCAATACACCACGCCGCAACGGTACTTGTTTTGTGTAGGTGACTTAAATTAATTCactcaacaggtttagaatcctaacttgctgggaacagactagttgactatgcacaagtgcaacaatggagttgaaccagggactacttggaaaaaatccagctggttggcggcccaaccactcggcggcccacccactcggcggcccaaccactcggccatcctgcctGATACCGCTCTTTCTCAAAGGGCACACTTACATtagggagcttgtgcagcaacaacggcaacggcaacgcaaacgttgctcgaaaataaacatttgggaattaaatggtgattattttgcgattattgcttcttcctcgcatcctttatcgttgacagagcacgctgcaaatggactgttagaagcgctgcatgttgaagtaaatgtagagaatgaga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24254	ODAD4, TTC25; outer dynein arm-docking complex subunit 4	-	Cilium and associated proteins	ko03037	deepkoala