Gene detail

Detailed information of amic_s0111.g43.t4 in Acropora microphthalma

Genomic Location: sc0000111_pilon:708369...740592
NR annotation: XP_029186368.2, dynamin-1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0111.g43.t4

ATGACAAAGGTTCCTGTTGGAGATCAACCCCCTGACATTGAGATGCAGATCAGAAGTATGCTGTTTCAGTTTATTACCAAACCAAATTGCTTGGTCTTGGCAGTGTCGCCTGCAAACTCTGATCTTGCCAACTCAGATGCTCTGAAAATTGCAAAGGAAGTGGATCCTGAAGGAGTGAGAACAATTGGAGTTATCACCAAGTTGGATCTCATGGACACAGGGACTGATGCAAGAGATATCCTGGAAAATAGAGTTCTCCCACTGAGAAGAGGTTATGTTGGTGTAGTTAACCGAAGTCAAGCAGATATTGATGGCAGGAAGGACATCAAAGCTGCTTTGGCATCTGAACGTAAATTTTTCCTCAGTCATGGATCCTATAGACATCTTGCTGATAAAATGGGAACAAGCTATTTGCAGAAGGTCCTAAATCAGCAATTGACGAATCACATTAGAGAAACACTGCCAGCCCTTCGTTCTAAACTGGAAGAGAATGTCATGTCTTTAGAAAAAGAAGTAGCAGGGTTTGAACATTACAACCCGGACGATCCATCCATGAAGACGAAAGCCTTGATGCAGATGATTCAACAGTTCAGTTCTGATTTTGAGAAAGCCATTGAAGGTGGTGGAGATTCCATCGACACCAAAGAGCTGTCAGGTGGAGCCAAGATTAACAGGATTTTTCATGAAAGGTTTCCCTACGAGATGGTCAAGGTTGAATGTGATGAGAGGCAGCTTAGGAAAGAAATCATGTACGCAATAAAGAACATCCATGGTATCAGGGTGGGACTCTTCACTCCCGATATGGCGTTTGAAGCGATAGTGAAGAAACAGATTGACAAACTCAGATCCCCAGCTGTCAAGTGCGTTGACATGGTGATGTCAGAATTGGCAAATGTTATCAAGAAATGTGCCTCCAATATGGAGAAATATCCACTACTGAGAGATCAAGTGGAGAAAATTGTAGTTCAGCACGGCAGAAAAGGAGAAGCTAAATCGAAAGACCAGGTTAAAACATTTATTGAAATGGAACTTGCTTACATCAACACAAACCATCCAGATTTTATTGGATACGCTGAGGCGTCAAACAGCGCCACTCCTGGAGAAGTAAGGAAAACAAAACGAACAATGTCCAATCAGGTTATTAGGAAAGGCTGGCTCACTATTAGCAATGCTGGATTCATGAAAGGCATCAGTAAAGAATACTGGTTCGTGCTTTCTGCCGACACGTTATCATGGTACAAGGATGAGGAGGAGAAAGAACAAAAGTATCAGCTAAGATTGGACGGGGTGCGTGTGCGCGATTCAGAAGCTGGTTTCATTTCTCGAAAGGCTGCTTTTTCGCTTTTTAATCCAGATCAGAAGAATTTGTTCAAAGACTACAAACACCTTGAGCTGGCGGGAGAAAATCAGGATGTGGTAGACAGTTGGAAAGCCTCGTTTTTGCGAGCGGGGGTTTACCCCGAGAGGGAAGCCTCTGACGACAAAACTCTGCAGGGAGAAATCGGCACCCTAGATCCTCAGATGGAAAGACAAGTTGAAACGATACGAAATTTGTCGGATTCCTACTTGAAGATCGTCAGCAAGACTGTGCGTGATCTGGTGCCCAAAACTGTGATGTTCTTCATCATCAATAACGTGAAAGAATTTATTGGTCAGGAATTGTTAGCACATTTATATTCAACTGGTAATCAGAACGATTTGATGCAAGAGAGTGAGGCGGAAGTCGCTCGACGGGAGGAAATGCTGCGCACTTTCCATGGTTTGAAGGAGGCGCTGAGAATTATTGGTGATATCGACGCATCGACAATGACAACAGCTCTACCTCCACCAGTGGACACCGGGGACTTGGATCTTACTGACTCCTACAAGCCATCAAGAAACTCCAGACACACCGCTCCACCTCGACCTTCCTCAGGCGCAAATCCTACACTGCCATCCCGTCCATCCCGTCTCGTTCCGTGCGTGCCATCGTGGCCTCATAATAATCCATCTGTTGAATGTGATGAGAGGCAGCTTAGGAAAGAAATCATGTACGCAATAAAGAACATCCATGGTATGAGGAATTTGTTCAAAGACTACAAACACCTTGAGCTGGCGGGAGAAAATCAGGATGTGGTAGACAGTTGGAAAGCCTCGTTTTTGCGAGCGGGGGTTTACCCTGAGAGGGAAGCCTCCGACGACAAAACTCTGGTGAAAGAATTTATTGGTCAGGAATTGTTAGCACATTTATATTCAACTGGTAATCAGAACGATCTGATGCAAGAGAGTGAGGCAGAAGTCGCTCGACGGGAAGAAATGCTGCGCACGTTCCATGGTTTGAAGGAGGCGCTGAGAATTATTGGTGATATCGACGCATCGACAATGACAACAGCTCTCCCTCCACCGGTTGACACAGGGGACTTGGACCTTACTGACTCCTACAAGCCATCAAGAAACTCCAGACACGCTGCTCCACCTCGACCTTCCTCAGGCGCAAATCCTGCACCAccatcccgcccatcccgtcccgttccgGGTGTGCCATCCCGGCCTGATAATGCGCCATCTGTACCCAAGAGACCCAGTGCGCCCGGGAAACCCACCCTTGCACCACCGATACCAGGCCGACCTCCGGTGCCATCAAGACCTTGA

Transcript

amic_s0111.g43.t4

AGCGACATCATTCGGTCGCCATCAGGAGATATTACGCTGTGGTTATAGAAGAGATCTTTCAAGATGGGAAATAAAGGCATGGAAGATCTCATTCCCATCATGAATAAAATCCAAGATGCGTTTGCCCATATTGGGCAGCCATCATCTATTGATCTTCCTCAGATTGCAGTTGTGGGAAGCCAGAGCGCCGGTAAAAGCAGTGTATTGGAAAACTTCGTTGGTCGAGATTTCCTTCCTCGTGGTTCTGGCATCGTCACAAGAAGACCTCTGATTCTACAGCTGCACCCTGCCAAATCAGAATGGGCAGAATTTCTTCACTGCAAGGGCAGGAAGTTTACTGATTTTGAAGAAGTAAGAAAAGAGATTGTAGCAGAAACCGATAGAGAAACTGGAAGCAACAAAGGGATCTCAGCTATACCTATAAACCTTCGTGTATATTCTCCAAATGTTTTGAACTTGACCTTGGTGGATCTCCCAGGCATGACAAAGGTTCCTGTTGGAGATCAACCCCCTGACATTGAGATGCAGATCAGAAGTATGCTGTTTCAGTTTATTACCAAACCAAATTGCTTGGTCTTGGCAGTGTCGCCTGCAAACTCTGATCTTGCCAACTCAGATGCTCTGAAAATTGCAAAGGAAGTGGATCCTGAAGGAGTGAGAACAATTGGAGTTATCACCAAGTTGGATCTCATGGACACAGGGACTGATGCAAGAGATATCCTGGAAAATAGAGTTCTCCCACTGAGAAGAGGTTATGTTGGTGTAGTTAACCGAAGTCAAGCAGATATTGATGGCAGGAAGGACATCAAAGCTGCTTTGGCATCTGAACGTAAATTTTTCCTCAGTCATGGATCCTATAGACATCTTGCTGATAAAATGGGAACAAGCTATTTGCAGAAGGTCCTAAATCAGCAATTGACGAATCACATTAGAGAAACACTGCCAGCCCTTCGTTCTAAACTGGAAGAGAATGTCATGTCTTTAGAAAAAGAAGTAGCAGGGTTTGAACATTACAACCCGGACGATCCATCCATGAAGACGAAAGCCTTGATGCAGATGATTCAACAGTTCAGTTCTGATTTTGAGAAAGCCATTGAAGGTGGTGGAGATTCCATCGACACCAAAGAGCTGTCAGGTGGAGCCAAGATTAACAGGATTTTTCATGAAAGGTTTCCCTACGAGATGGTCAAGGTTGAATGTGATGAGAGGCAGCTTAGGAAAGAAATCATGTACGCAATAAAGAACATCCATGGTATCAGGGTGGGACTCTTCACTCCCGATATGGCGTTTGAAGCGATAGTGAAGAAACAGATTGACAAACTCAGATCCCCAGCTGTCAAGTGCGTTGACATGGTGATGTCAGAATTGGCAAATGTTATCAAGAAATGTGCCTCCAATATGGAGAAATATCCACTACTGAGAGATCAAGTGGAGAAAATTGTAGTTCAGCACGGCAGAAAAGGAGAAGCTAAATCGAAAGACCAGGTTAAAACATTTATTGAAATGGAACTTGCTTACATCAACACAAACCATCCAGATTTTATTGGATACGCTGAGGCGTCAAACAGCGCCACTCCTGGAGAAGTAAGGAAAACAAAACGAACAATGTCCAATCAGGTTATTAGGAAAGGCTGGCTCACTATTAGCAATGCTGGATTCATGAAAGGCATCAGTAAAGAATACTGGTTCGTGCTTTCTGCCGACACGTTATCATGGTACAAGGATGAGGAGGAGAAAGAACAAAAGTATCAGCTAAGATTGGACGGGGTGCGTGTGCGCGATTCAGAAGCTGGTTTCATTTCTCGAAAGGCTGCTTTTTCGCTTTTTAATCCAGATCAGAAGAATTTGTTCAAAGACTACAAACACCTTGAGCTGGCGGGAGAAAATCAGGATGTGGTAGACAGTTGGAAAGCCTCGTTTTTGCGAGCGGGGGTTTACCCCGAGAGGGAAGCCTCTGACGACAAAACTCTGCAGGGAGAAATCGGCACCCTAGATCCTCAGATGGAAAGACAAGTTGAAACGATACGAAATTTGTCGGATTCCTACTTGAAGATCGTCAGCAAGACTGTGCGTGATCTGGTGCCCAAAACTGTGATGTTCTTCATCATCAATAACGTGAAAGAATTTATTGGTCAGGAATTGTTAGCACATTTATATTCAACTGGTAATCAGAACGATTTGATGCAAGAGAGTGAGGCGGAAGTCGCTCGACGGGAGGAAATGCTGCGCACTTTCCATGGTTTGAAGGAGGCGCTGAGAATTATTGGTGATATCGACGCATCGACAATGACAACAGCTCTACCTCCACCAGTGGACACCGGGGACTTGGATCTTACTGACTCCTACAAGCCATCAAGAAACTCCAGACACACCGCTCCACCTCGACCTTCCTCAGGCGCAAATCCTACACTGCCATCCCGTCCATCCCGTCTCGTTCCGTGCGTGCCATCGTGGCCTCATAATAATCCATCTGTTGAATGTGATGAGAGGCAGCTTAGGAAAGAAATCATGTACGCAATAAAGAACATCCATGGTATGAGGAATTTGTTCAAAGACTACAAACACCTTGAGCTGGCGGGAGAAAATCAGGATGTGGTAGACAGTTGGAAAGCCTCGTTTTTGCGAGCGGGGGTTTACCCTGAGAGGGAAGCCTCCGACGACAAAACTCTGGTGAAAGAATTTATTGGTCAGGAATTGTTAGCACATTTATATTCAACTGGTAATCAGAACGATCTGATGCAAGAGAGTGAGGCAGAAGTCGCTCGACGGGAAGAAATGCTGCGCACGTTCCATGGTTTGAAGGAGGCGCTGAGAATTATTGGTGATATCGACGCATCGACAATGACAACAGCTCTCCCTCCACCGGTTGACACAGGGGACTTGGACCTTACTGACTCCTACAAGCCATCAAGAAACTCCAGACACGCTGCTCCACCTCGACCTTCCTCAGGCGCAAATCCTGCACCAccatcccgcccatcccgtcccgttccgGGTGTGCCATCCCGGCCTGATAATGCGCCATCTGTACCCAAGAGACCCAGTGCGCCCGGGAAACCCACCCTTGCACCACCGATACCAGGCCGACCTCCGGTGCCATCAAGACCTTGATGGTAAATAACCACATCACTGTACTATCAAGCTCATGATGGACTAAACAGTCAGATCTTTATACATTGATTACTCGTTGTAGTTTCAGTCTAAATTCATAGCGAAAATTCTTCTTGAAGATGCATGCATTGAGTGAGGACAACAGTGGCTTATCTTGTTGAGCACTCAGGCCTGTGGAATCTTCTTTCGTAGAAAAGTCTCTTTCTTTTTTTTAAATCAAAGGTCTTGCGCCGTGAATGGCAGGTTAATTGGTAGGAGGGAATTCCAAGTGTGAAAAAAAAGGCTGTGCATGAAGCAATATTTTTACTCAATCAAATTTACCTTAGTTAGCCTTTTTGACACAGTAGTGTTTATGTTATCAACTTTGCAAACAACTCTAAACTTGTTCTATTCCATGATACAGTCCGGTAATCTCTCTTTTCTAACTGCCACTAAGTTAGGAATATAGTTTTAAAGCAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21575	Dynamin-1 OS=Rattus norvegicus OX=10116 GN=Dnm1 PE=1 SV=2
P39053	Dynamin-1 OS=Mus musculus OX=10090 GN=Dnm1 PE=1 SV=2
Q05193	Dynamin-1 OS=Homo sapiens OX=9606 GN=DNM1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0111.g43.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.