Gene detail

Detailed information of amic_s0112.g10.t1 in Acropora microphthalma

Genomic Location: sc0000112_pilon:107656...113280
NR annotation: XP_044173100.1, LOW QUALITY PROTEIN: RNA-binding protein 28-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0112.g10.t1

ATAACATGCCTACCTGATCATCTTTCACCACTCCGCTGACATATCGATGGCTCACCAGGTGTGGTGCGACCTCGAGACGAGACTAATAATCATCATGGCGGATGATTGCCCAAAAGAGCAGAAATCGGAAAACCCCGCTTTAGTTTCTCAAAAGAGAGTTTTTGTTCGAAATCTGCCTCTGTCTACAAATGAGCAAGATCTTGAAAATGTTTTCACTGAGATTGGTCCTGTCTTGAATGCTTCTGTTGTCCGCGATAAGGATAATAAAGAAATAGCTAAAGATGAGAACCAAGGGCCTCCAGCAAAGAAGTTTAAGGGGGAAAAGAAGTCAAAATCACAAAGGAAAAGTGAAGGAAATGAATTGGGAAGGACTGTCGCAATAACTGGGCTAACTCATGGGCTCAAGCCAGGCCACATACGAAAAAGATGTGGTAAGATTGGAAAGGTTGAAAAGGTTACATTTCCAGTAGAAGGCAGGGAAAAGGCGACAGCATTTGTTGTCTTTGAATCTCGCAAAGATGCCAGAGAAGTGGTGACAAAATTGTCGGGGAGAATATTTAAAGGCAACACCATTAATGTTGTACTTCTTTCAAGAGAAGGGAAGGCCCACAGTCAAAAATCACCTAGGAAATCAAAACTTATTGTAAGAAACTTGTCCTTCCAGTGTAAACCTGAAGAATTGAGGGATTTTTTCTCAAAGTTTGGACAAGTCACAGATGTGCATATTCCTAAGAAGTCGGATGGAGAAAGAAAATGCAATGCTGGTTTTGGGTTTGTGCAATTTTCTAATGTATTTGAAGCTGCCAGGGCCATCAAAGAATCTAACACAAAGGAGATTGTTGGTAGACCTATTGCTGTTGATTGGGCAGTGTCACAAGCTGTTTATAAGAAAAAGGCTCTTGATAAAGGTCTTCTTCCCTTGGAAAGCTTTAGGTTGAGTATCACCAAAGCTGTGACGTCAGGAAAGGCAGCAGAACTCAAGAAGGAAAAGAAGGCTGAAGCGAAAAATGAGAACAAAGACAAACGAAATTTGTCACCCTGATGAGTCCAGTCAAACAAAAGATTTGAACAGAAGAAGAAGGAAAACTGCAAATGAAAGTACGTGGAAAGAGGTAAAAGGAAGACAGAATTTTCCCCCCAAGGTACCAGTAGCTCGAAAGCTTCTTAAAAATGGTCAACAGGAAAGGCAACAGGTATCTCGTGTTTCATTAAGCGCGAGAAAATCAGACATATGAACACACAGCGCAGAAGCAAGTCCTACATCTAATAAAAGAAAGTTGGAAAGCTCAGAAAAACGCCTCAGCAAAAATGTTCCCGAAACTGGTGGAAGTTCATCTCTTTTCGCAAACGGTGCAGGTAACTTGGTGAATAAAAGGCGGAAAGGAGCTTTTAAACCTAGTATGATAATGCCACTGGCTTTTTCAACAGTTATTCTTTTTATAATATCTCTATTTCAAATCCGATTTCTTTTCAAGTTACATCTGAACTGATGTAGGCGTTTCGTAAGGGAATAAAAATTCCTGTGAAAGTTTCATGTAGCTTTACACGTGGTGTAAAACATTTTTTCAAGTTAAGTAAACAGAGAACTAgttttagtttctagttctcgaaatagttcttgttctacaaatagcttctagttctagaaaaagttatatctagttGGAGAAGTGGTATTGAAAAAGAGAAAAATAACAAAAAAGGCCTTTTCAAAAAGGGCGTTTACCTGGGTGGACAGAAGAGGTGTTTGTAATACGTGGTGCCATATCTGGGATTGTACCCACCAATGATGTGCGAGGATGGGATGGGACACGGATAGAAGGCACAGTTTGTAACCGGAGACCGTGCTAGTTCTAGAAATAGTTTCTAGTTCTATTGAAAACGATTCGACTGTCTCATGtttttttttgttttgtattgttttgtttttgtttttgttttttttAAGGTGTGTAGCATTTAAGATTAAACACATGGCCCTTGTGGTTTTTGTACTATTGAAAACGTGATGCATTGATTCACGGTTAAAGGGTAATCATAAATTAATAAGCTTGGCTATAGCATTTTTATTTAATCAAACATTTCGTTAACAAAACATTTTGTTTTGC

Protein

Uniprot

Uniprot term	Description
O22173	Polyadenylate-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=PAB4 PE=1 SV=1
P42731	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=1
Q8L3X8	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan