Gene detail

Detailed information of amic_s0112.g33.t1 in Acropora microphthalma

Genomic Location: sc0000112_pilon:322356...329029
NR annotation: XP_015766912.1, PREDICTED: mitochondrial ribonuclease P protein 3-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0112.g33.t1

GGTATATGCATGAAGTCTTTCGCTATCAACGGCGCCAAGTTTGATGATAAAATGCTCCGAGTAAAAACTGTGCACGTTAAGGTATCTCTTACTGAGATCCCAGGTGTTTTTAGATCGTATGTTATGCTTAAACGACGACAGTTCTGTATGGCAACAAAACAGCAAAACGAGCTGCTGAGGACGGAAAATGTCAACGAAAATAGAACAGATCAGAAACAAGTTGGAAACATTCGATGGTTCTGCAAAGCTGAGACAAGTCCGCACGAAGTTGCAAACTTCTTTAATCAGTTACGCAATCTTCCTGTTAAACATCGGACAAGGTCGTTAAACTCTGCACTGTATTGGTTTTTGTATTATGGAAAGACTAAGGAAGCTTTGGAGCTTAATTATCTGTGGGAGACACAAGGTTTTCCAAAGAGCTATTCAACCTACGCTAGCTTGGCGATCCTGTATGCTAGATGTCGCCAATTAGGAAATAAGAGAGACTTCTTTCACCAAATGAAGCTGAGTGGTTTAACGCCAAGAGCGCGCCACTATGAGCCATTTCTAGCAGCAGCTACAATAAGAGGGGATTTAATGGAAGTTTTCGAATCTATGTCGGAAATGGAACATTCCTCTATTATCCATGAAATGAGCCTCGATCTTTATACATTACTTATTCGAGCTTGCACAGGAAAGGAACATAACCTCCAAGACAACAATGTCTTCAAAATCTTTCATTACTTTATGAAATATCGCACCAAGTTGACAGACGATGCTCTTCATGCAATTAGGTTATGGTTTGATAGAAGAAGCCAAACAAAGTGGATAACATCTTGGACAATTGCATCACCAACATCCCACTGTCATGCCTGCAAGCAGAAGCTAGAAACTGGTGAATTTTCTAAAGAGGAGCTTGAAGATTTAAAGCTGAGTTTGGTTAAGCATCTTTGGAAGCCACACAAAACTCTTCAACAGTTGAAATGTTTCACATCTGCAGGAAATTTTATTGATTATGTCAACTCAGAGCAACTTAACAGAATTCCTTTGAGTGTAGAGCATTTTATTAAAGATACAGGACGATATGATGTGGTTATTGATGGACTTAATGTGGGATATATCAAAGGCTTTTTTGATCCCAGGAATATTCAAAATGTGGTGTCGCATTTTGTAAAAAAAGGAAAGCGAGTTCTGGTAGTAGGTTCAAGCCCTTTGAGATTGTCAGAAAGAACAAAGAAGGGCAAGCAGACACCACTTGGTGCTCTGGTTGAGTACTTGACCATTCACGAACAATGTGGCCTGATTTCTTTGCCAGAATGCTCATTGGATGACCTATACTTTCTAAGTGCAGCAATGCATTGTGGGCCAGGAACATTGTTAGTTTCAAATGACAAGTTTCATGATCATAAATTTGACATTGATCCATTAGTGAGGATCCACTTCAACAGATGGCAGAGACTTAACAATTTAACCTTGAAAGGTTTTGTTGATGAAAGCCCACTGTTTGTGCGCGAGAATGAATGTGATCCTGCTGTCCAAACCAATGGTGACACGTGGCATTTTCCATCCAGTGATGGCAACAGATGGCTCTGTGTCCAGAAAGCAAAAACTTAACTAGTGAGCCTTCTGTAGTTTGTACTGTAGTAGTATTATAGTTAGGAGCAGTAGGTTACAGCCATGTATCTCAAATTCAGGCCTGAGATAAGTGAAGGCATCACGTCTAACGTCTTTGGCATCTTTGCGAGAAAGTGTCATTGACAAAATACACAAAAATCATGTCATCAGTTGGTGGTCATTTCTTGCCCTTTTTCGACATTGCAACCTTTTTCACATTTCTTTGCATGCATTTTGGCGGTAAAGAGGAGTTGGCTACAGAATTTATAGGGAAAGAGAAGGAGAGAGATGTACGCTGGGATACCTAAGAGTCTATTTAACGGAGATTTTATATTCGCTGCTATTTTGTACCAAATGAGGTGTTATGGATGGCTAGTTAAGCAGATTGAGGTTAGAGGTGTAAGGCATGTTTTTTTTTTCTTCTCGAAGCTCGTTGAATTAATATTTGGTTTCGTTTGCCCATTTTATCGTCTTACATTTTACCAGTAATTAAAGATGACCTTTCGTGAAATTTGAGCCCGTCGATGAGTCTGGGAAAGAGAATAAATGAAAAATCGCGACGGAGCCTCGCTCTTAAATCGAGGTTAATTAAATGGAAAAGTTTCACGGCTATATTGAGGTACTTGTTCAAAATTACATGATTAAACCGCTTAAATAAATAAGCAGAGGTTTTGTGGCGACGTTTAGTCGTTTCGGGATTGGTTAGTCGTCGTATTTATTCAACCCACCTGTTAACCACCTCGGTAACTGTTGGAAACATTAACAGGTCCCTTGTACTTGTTTACAAATTCAACGCAGTGGTAAAAGAATATTAAAGGTACATTTTGTCT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17177 all species →	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan
PF16953 all species →	PRORP	Protein-only RNase P	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR033443 all species →	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan
IPR031595 all species →	Domain	Protein-only RNase P, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13547 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0004526 all species →	Molecular Function	ribonuclease P activity	Interproscan
GO:0030678 all species →	Cellular Component	mitochondrial ribonuclease P complex	Interproscan
GO:0097745 all species →	Biological Process	mitochondrial tRNA 5'-end processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17655	MRPP3; mitochondrial ribonuclease P protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.