Gene detail

Detailed information of amic_s0112.g53.t1 in Acropora microphthalma

Genomic Location: sc0000112_pilon:504994...528534
NR annotation: XP_029186483.2, nucleoporin SEH1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0112.g53.t1

AAATTTCATCGATTGAAAATGGCGGTCTGTGTGGCCGTCATCGGAAAGGAGAACTACCCGCTATTTCTTCGCACGGTTTCTCCCGAAGAGGAGCTAAAATTTCACTACACAGTGCACACTTCTTTGGATGTTGTCGAGGAAAAGGTGTCATCTCTCACTAAAAGTTCAAATGATCCACGTGAGCTCTATCTTGGCTTGTTATACCCCACAGAGGACTATAAAGTATATGGTTATGTAACCAATACAAAAATCAAGTTTGTTGTTGTAGTTGAATCAGCCAACACCTCCCTTCGAGACAATGAGATAAGAACGGTTTGGGATCTTGAAAAAAATGATCAGTGGATCTGTACAGCAAGCTGGAAGACTCATTCTGGGTCAGTATGGAAAGTTACTTGGGCACACCCTGAGTTTGGACAGGTTCTGGCATCTTGTTCGTTTGACCGAACTGCTGCAGTATGGGAGGAGCAAGTGGTAGGCACTAGTACTGGAGATGGTATTTTCCATGGGCAGAGCCATTGGGTGAAAAGAACTTCATTGGTTGACAGTAGGACTTCAGTAACTGATGTTAAATTTGCTCCAAAGCATTTAGGGTTACGACTGGCAACCTGCTCAAAGGATGGCACAGTTAGAATATATGAAGCTCCAGACATAATGAATCTTAGTCAGTGGCATCTTCAGAATGAAATTCAGCACAAATTAAGTTGTAGCTGTGTGTCTTGGAATCCATCCAGGAAGTGGCACAGAGTGGAGACTCTTATGGCAATTACAGATGCTGTCAATGATGTTGCATTTGCTCCAAACCTTGGAAGATCATACCATCTGCTTGCTATTGCTTCAAAAGATGTTCGAATCATGATGCTGAAACCATATGGAGATCAAGGCACTAGTGCAGGGGGAAACATGGCAAAGCTGGATATCAGCTTAGCAGCCCGTTTCAGTGACCATGAATCACAGGTATGGCGAGTTGAATGGAATGTAACTGGTACTATTCTTGCCTCCTCTGGCGATGATGGTCGTGTGAGATTGTGGAAAGCCAATTATCTTGACAACTGGAAAAGCATTGCAGTTTTACGAGGAGATGGCGTACCAGGTTTCACAGGTGGACCTAGCGATGTCACTGACAAAGATCCTAAGGAAGCAGGAATGCCATCAGTCATCCCTCAAAGGATGTGGTACTCATGATCTTCCTGGGATCATCTCAGAATCCACAGAATCAATAAGAGCTGACAGAGTTCAAGAATATTTTTGGTTCACTTTTTATCAGTTTTCAATTTTTTTTCTTTTTCTATTGTAAAGACACTGATCGCAGATATGTTTTGCAACACAAGATTACATTATTTTTTTTTTTGGATTGTTTTTGTTTTCCTAAGCGGCAGGCACTAGCTTTCCTATGCCCTATGGTCGGCTCAGGTAATCCAAAAAATTGAGAGAGATTTCCAAAAAATAATGAAATGAGATACAAGACCTTTCTAGTAAGAACTGCAAAATCTCCACTTTTTGCTCttaaataaaggcattagggagcttaaccctttacctcccaaggggttccccattgacgagtaaaatcgtctggcgttagacagagtaaaatctataagtgccaattggcactcatgggagggaaagggttaataaggataaataattaatcaAGACAAGGACGTCATTTGAAAATCTACATTTCTGCAATCAGTTCTCAACCATTTGACAAACCAAACAACTTGGAATaataattattatattccaagtttattggtgtgtcaaatggtttctgatcatcatggaaataggtatgagtggtttggagatgaaaagaacaaaatgaaaatttgttgttgagggcacgctgcttcatccacccaagaaaaacaggtcactgcatgttgtagattgaacaagaacagctggttaatgtgccaaaataaaaaaacgcttgtgcaaaaatacctggttttttttttgcatttTGTGCAttttgaaggcagtatgatgtgaaaactggtagccaagagcaaacttaaaaatgtggatatcactcaaatcgtttaacttaaggatggattttttggcgcagagatatgtatgtaatttacagtgttagagaatgtcattatttaaaaagaacaaaaatagaagtaaagctaaaaatttgcattgttctctgggttttccccagcaaaccatgatgatcaacaatgctggtcatcatgatgtttcagtagtgtgccaagctcaagcctaccaaatggttggtcaacaaaaaagtgggcctctgaagcctgtaggtGGATTGCACCCCCCTCCCTACCAGCCTGctatttatgtcgtttttgagccttgcaggttttacagtgtcccacaagtattaatcacagatgcctagcacctgatcatttcaggctttggccaccattttggactgactgacacaagtggtctgatgctactatcaatctgttgccagacaagataaattttaatatcgtgaatttcaaaagtgcaaggtcatgaccatgtcaaactttagtctagagtgatataccgccgaccaaaactcgttcaaatcctgtgggtgtgttcccatggtccagtgaagtggtttccaaaactagaccactcccctcccctctgtggaaaaaagaaataccaaaactgtaccattccccttgcgtatcccaggggtcgacccatggggaagtaaatgatacTGTAAGTGCataaagccacaaaacacatcgaacgcacttttttaatatctgattattactagtGGTAATTTTAAGCAGATGCAAGCATTGTGTTAAATAATTAAAGAACAGGAAACATTTCCATGATACAGTTGTAGTTGTGACCAAAATGTCTACGGTAATATTACTTTTCTCTTGGTATTTGTATTAGGCTAACATTTAGCCCATCAATAAACATGTAAGGTGTGATTTGAGGCAAGTCAACCAATCAACAGCCTTCCAAGCTGTGGTTTTAAGAAGACTGTGttaaggatggtgcctactaattaaagatatttttcccccagtgtgtgattatgcaggaaatgtagatcttaacaagtcctattgaaatccaacaataaaattgggggtaacca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4FZW5	Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=1 SV=1
Q5U4Y8	Nucleoporin SEH1 OS=Xenopus tropicalis OX=8364 GN=seh1l PE=2 SV=1
Q96EE3	Nucleoporin SEH1 OS=Homo sapiens OX=9606 GN=SEH1L PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005504 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04628 all species →	Sedlin_N	Sedlin, N-terminal conserved region	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044760 all species →	Family	Trafficking protein particle complex subunit 2-like	Interproscan
IPR037363 all species →	Family	Sec13/Seh1 family	Interproscan
IPR006722 all species →	Family	Trafficking protein particle complex subunit 2	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11024 all species →	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0031080 all species →	Cellular Component	nuclear pore outer ring	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035859 all species →	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14299	SEH1; nucleoporin SEH1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.