Gene detail

Detailed information of amic_s0113.g117.t2 in Acropora microphthalma

Genomic Location: sc0000113_pilon:1631941...1645272
NR annotation: XP_029197783.2, lipid droplet-regulating VLDL assembly factor AUP1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0113.g117.t2

AACCTTTGATGTATTTTCAAGGGAAGTTCTTCAAATGCAGAAGTCATTAGCAACAATTTCCTCTTTCTAAGACTCAGGGAGAGCTGATTACAATGGCTTTGAAAGATCTCTTCTTTTTAAACAGGTTTCCGGATGGAGGAGCACTATTCCTTCTTCTGTTTTACATTCCCTGTGGACTTTTGCTCGTAACATTTAGATTCTTTCTTGGACTGCAGCTTCTTCTGATGATGTCAATTTTGCCTAAAGAGTCATTGGTGAAAAGGATTTTATTCAGAGTGTCTTGTTATATACTTGGTGTGGCAGTCACGCAGGAGGGTGTGGCAGAGCATTACCTTAAGGGCCAGCATAAGGTTATTATCAGTAATCATGTTACTTATCTGGATAATGTTGCAATTGAAACCATCATACCAAGTGTTATGCCATTCAGTCAATGTGACTGCCCGTGGCTGATAAAATGGGCCTTAGGTTACAAAGACTTCCATGGTAATGAACAAAAGGAAAATGTGGATTACGAAATAAAAGAATATTCACAAGAATCTAGCTGTCCTCTCCTGGTATTTCCAGAGGAGCAAATTACAACTGGGAAAAGAGGGCTCTTAAAATTCAATCCCTGGGGGTTTCAGTTTAGTGACACAGTATTACCTGTATTGATCTCAGTGAGGCGTCCATTAATGGTCCAAGTACCTGCGCATGTGCTAGGGAGTGGCTGGTGGCAGGATTGGTTCTGGTTCATGCTTGTTCCGTACACACATTTTCATATCAGGGTACTTCCTCCGATAGAATTAGCTTTAAAAGATTGCAGTGATGTTCAAAAGCACATGGCAAGTGCACTTGGTGTGGCAGCTACAAATTATTCATCAGATGATGTCAATGAATTAATGAAGCAAATTGAATCACAATCTAAAGGCGTACCACAAGCTCCAATCCAAGCAAGCCAAAATGTCAGAAGCATTCCAAGAGACACTGGTAATGCCACTCCCAACACCAGGTTAACACGTATGGTAAAACAAGTCAGGGACGTGTTACCACAAGTGCCATCAACAGTTATTGCTCGAGACTTGAGCCGTACTCACTGTGTTGACACAACTATTGCCAATATTTTGGAAGGAAGAGTTAGTTATGTACCAGAGAAAGAGAGTAACCACACAGAAATACACGATGTCAAGACGAGCTCCACAACTCTTTCAAATGAGACTGCACCAACCAAACCACAGCCAGTGACCTTCTCGCGCTCTCCAGAGGAACGGCAAAAACTGCTCAATCAGCGTAAGGTCATAATGCTGGAAAATGCAAGGAGGCGTTTTGCTGGCACTATCAATAAAGAGATCTAGCATCTACTGTGAAAAGCTACATGCATAAAAGATAATCTGTCTACTTTTAGATATCACATTCAAGATACCTAGAACTGAGGTCAAGTTGTTGTGGTTGTGCACAATTTTTTTTAAGGTCCCAGTTGTAATTGTGCTGTCCAACAGATTGATCCGCTGGACAACACAAGTCAACCTTTATCATAACTGAGAATCCATTAGATAGGAGATATGGAAACTTAACTTTTGTCCACTGGATGCTGGTGGGGGCTGGTTATTAGTTTAAGCAAGAAAAATGTGAACAAAGGTCTCTTCAAAACTAGGCTGCACGTAGGTTCATTATTTGAATGGCTTTAAGACTCACAGTACTAGAAGAGTTTTCATGCATGATATTTCCAAATAAACTCTTCACTCCAGGAAATCACTTAATGTTTGTACCTTGACAAAGTCTAACGGTCGAAGTTTAAGATATGGTTAAATCTTTCAGTTGTTTAACAAGTTATCAGCAAAAATGGGAGGTATTATGTCTTCATTATATATAATAAGACAATGACAACATAATTATTTGAGAGCATCATCAGAAACTGTCACTGGAAAAAAGTTGTTCAATAGCAGTGAATGGGGAGTTGAGTTTCAAGAGAAATAAAGATTTGTTGTGTAGCACCCAAGGATTTACagtcatgacacccccaagatataacgcccccaaacatgggttaagaacttaagtgtactgcatgtaaggctttaggatttaagaaaggtaaggtagaatg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9ULG4	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Xenopus tropicalis OX=8364 GN=aup1 PE=2 SV=1
B1H1N7	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Xenopus laevis OX=8355 GN=aup1 PE=2 SV=1
Q9Y679	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Homo sapiens OX=9606 GN=AUP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006267 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|CUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18442 all species →	G2BR	E3 gp78 Ube2g2-binding region (G2BR)	Domain	Interproscan
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040675 all species →	Domain	E3 ubiquitin-protein ligase AMFR, Ube2g2-binding region	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR048056 all species →	Domain	AUP1, CUE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15486 all species →	ANCIENT UBIQUITOUS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19716	AUP1; ancient ubiquitous protein 1	-	Cell motility	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.