Gene detail

Detailed information of amic_s0113.g39.t1 in Acropora microphthalma

Genomic Location: sc0000113_pilon:658037...664001
NR annotation: XP_029191615.2, retinol dehydrogenase 7-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0113.g39.t1

CTACCCGAGGGATGTAAATGAAGCCATTAATTGAACAATAAACAAAAATTCCACTTGAGGTTAGTGATCATGCAATTCGTTTGCGTGTCTCAATGAAACGTTGCAATTCAAAGCAATGGATTTCGGATTCATTTTTTCTTTCCCGTCGTTGTTGCTGCTGATAGCTATTGCTCTCCTTTCGATTTATCTCGTTGCCCGTTTACTGCCGAAGCCCAAAATTGATATAAAAGGAAAGTATGTTTTGATCACTGGTTGCGACACGGGCTTCGGTCGAGCGACGGCGCTTGAGCTGGACAGGATGGGAGCGTATGTGTTGGCGACTTGTTTGACGAATGAAGGAGAAAAAAGCTTGAAATCGGTGACGAGCGACAAGCTAAAAACATTCCAGATGGATGTGACAAACTCCAAGCATATTAAAGACGTGTACGAAGAAATAAAGAAAGAAACTTCACTTGATGGATTGTGGGGAGTTGTCAATAATGCAGGGATTTTATGTTTATCACCACTTGAATGGATGCCTTTAGATGACTTCAAGCGAAGTGCTGATGTGAATATATGGGGAATGATTGAAGTCACAAAGACCTTTCTTCCATTGCTAAAGAGATCCAAGGGACGCGTGGTGAATTTGTCAAGTTCAGCAGGAAGGATAGCAGGTCCTCTTTATGGATCTTATGCAGTGTCAAAGTATGGCGTGGAAGCATTCTCTGATGCTTTACGACGGGAGATGCATCCCTGGGGTGTTAAAGTCAGCATGCTGGAGCCTGGATTTTTTGCCACCAACATTGCTGCTCCAGATTTTCTTGAGAGCGAATTAAGGAGGGGATGGAACCGACTCAGCGAGGATCTGAAAGATGACTATGGAGAGGAATATTTAGATAAAGCAATAAACATTGTGCGTAATTTGCCTTGTTTGTCGGATATCAGTGAGGTTGTGAATGCAATAGTGGATGGCTTGACATCAACTTCTCCATCTGACCGTTATGTGGTTGGCCTAGATGCAAAATATGGTCTCATACCCTTAAGCATTTTGCCAGCATTTGTTGGTGACTTTATGATACGTTTTGTTTTCAAACCGCCATGCCCACAAGGTTGTCGCAAATGAGACTGAAGCAAGTTCAAGTGAGTACAAGGAAATCATCAAGTGATATCAAATACAGATGAACTCAATGAAGACAAAAACTTAACTCTTCCATCTTCAGAGATGATGGAAATTATGAACCCCATTGATAAGATAGAAAGCAGATGTATTAATTTTGTTGTTGTTGGTTGGAGAGAAGCAACAACCTGAAATACACCTGCACTCACAGACTatacacccaatgcataaatggcggcttaattattattcttttatataaatgcttattagactgacttgcctcatttttgtttgaaaattctttaaatttttgcatgctgattagtaggctagtgaggttaattagcacaaagataaaagaataattaattgacagccatgtatgcatttggtgtataaagcTGGAAGGTGGAAAGTActttggaaaacacctttgagttggccaatcagaattattataacaaagccggcaaagtcgcacaatttcagtcaatcaatttgcttactttgttagtgtgctccataatcataatgtctgtaagttttcagtgggtttggagaaagtaaaatttgattaagtgctgtggtgtcgatgttgtaaaacaatgataataataattagtattggttcatggttgacacaaggccattgagtagatgaacttgagaagctgctaagcaccaagGAGGCTAGAATTGCAATTGCCATGTGTGAGTCTCACAATATTAATCTTCTTCACACTAACCCAACCTGCATCCATGGATGCATGCAATTGCTAACCTTGAACCCATAATATTGTTAATTATGCACAAAAATCCTATTCAGCTGTGGGGTATTAGAGTAAAGTAATGAATCAATAATATCATTGAATAATTTAATCATTTTTGTTTGTCGTAAGGTCCAGTTAAATTAATTAGGTACCATAATAATACTTTTAAAAACATATGTTGTACAGGTGATCTCTTTGATTTGTGAAAACAAAAAAATGGAGATGCTTTTGATAAGAAACAACTGAAACTATGTGCAAGTACCGGTAATTTCATTTCCTCCATGATCGATCCAATGATCATTTCAAACCTCATTAACAGTGCCATTTCTGCAGTTCATGTACGCGATTTATTTCACAATTTGAGTTCAATTAAAATAATTGTTCAAAG

Protein

Uniprot

Uniprot term	Description
P55006	Retinol dehydrogenase 7 OS=Rattus norvegicus OX=10116 GN=Rdh7 PE=1 SV=1
O88451	Retinol dehydrogenase 7 OS=Mus musculus OX=10090 GN=Rdh7 PE=1 SV=1
Q8K3P0	Short-chain dehydrogenase/reductase family 9C member 7 OS=Mus musculus OX=10090 GN=Sdr9c7 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11154	RDH16; retinol dehydrogenase 16	EC:1.1.1.-	Retinol metabolism	ko00830	deepkoala