Detailed information of amic_s0115.g2.t1 in Acropora microphthalma

Genomic Location: sc0000115_pilon:28798...59325
NR annotation: XP_029195887.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114961386 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P42694Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Q6DFV5Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
Q9BYK83'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004717 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13086
all species →		AAA_11AAA domainDomainInterproscan
PF00773
all species →		RNBRNB domainDomainInterproscan
PF13087
all species →		AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001900
all species →		DomainRibonuclease II/RInterproscan
IPR041677
all species →		DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR022966
all species →		Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047187
all species →		DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041679
all species →		DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR045055
all species →		FamilyDNA2/NAM7-like helicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887
all species →		DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →		Molecular FunctionRNA nuclease activityInterproscan
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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