Gene detail

Detailed information of amic_s0115.g38.t1 in Acropora microphthalma

Genomic Location: sc0000115_pilon:761276...777366
NR annotation: XP_044165874.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114949432 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0115.g38.t1

ATGGTGCAGGGAAATATGGAATTTAGTCGCTTGGTGATTTATCTTGCGTTGGGTGTTTCTTTTGTATCAGGAGTCTGCATTCATTTGGATCTTGGTATGGAAAATGGAGTCATTCCAGACAGCAAAATAACTGCTTCATCTGAACTGAATGCAGGAACGCCAGCAAAGAATGGCCGGCTGAACTACACAGCTGGACCATCTTGGTGCGCACAAACCAATGACAACAATCCATATCTACAGATTGATCTCCAATCCCTTCACGTCATATGTGCTGTATCATCTCAAGGGAATTCCAAAGCAGATGAATGGGTGGAGACCTACACAATAAAGATATCAACAGATGGTGTCCATTGGACAGATTACGACAACGATGGACACCCAAAGATTTTCTTCGGAAATAGTGACAGGAACAGTGAAGCGAAAGCTATCCTCGGAGTCGTAACTCGATGGCTACGAATTGTTGGGAAAACAAAACACAATAAGTTTTGTATGAGAGCAGAATTGTTTGGAGTGAAGCGTCACCCAGAAAACCTTGCGCTTAAGAAGACCGCAGCACAGTCATCCAGGCACAACGACTCCAGTGGAGCAAAAAACGCAGTGGATGGTAATCGAAATCCACTGTTTGATGCGAATGGTAACTGTGCCCTCACTCAAGAAGACGACCCCAGCTGGTGGCGAGTGGACCTGGGCACAAATCGTGTGCCAGTTTCAGATGTTTTTATTGTGAACCGTCTCTTTCCACCATCTGCGCTGCAAACTAATGGATATTACAATATCACTCTAGGTGATCACCCAAATGTTGAGCGAAATCTGGCGTGCGGTGGCCTGGTTCGGTTTAAAGATTTTATTGCTGCATCAGTGTGTTACAGGAATCCATTGAAGACTGGACGATACGTTGGTATTTTGACCACACAAGGGAGAAGTATCCTCTCGTTGTGTGAGGTAGAAGTTTATTCTAGAGAAAATCTTGCATTTAACAAACCAACAAAGATGATTGGCGGACCCCCGTGGCATCCTAGCAGCAAAGCTGTGGATGGTAATAGCCAAACAACATTTAGGTCTTGTACTCATACCCAGGAGGATTCCGATTTTCAAAATCCATGGTGGAGAGTAGACTTGGGACGAGTGGAGCCTGTAAATGAAGTGTACATTGTCAACCGGGGGGACTGCTGTGGGGATCGATTGAATCCATTTGAGATCAGAGTGGGTCCAGCGTCAAGTGATAATGGTATCACCAATCCTTTGTGTGGCAGTGGCCTCAGTGTTCCCCAAGGAAAAGGTGTTTCCTTCTTCTGTCGTCCTGCTTTGTTTGGACAGTATGTCACTATAAGAGTGACTAAAAAGGAAAGGTTGCCAGTGCACATTTGTGAAGTTGAAGTGTATTCTGCAAGAAGAGCTTGTCAGATGCAAGCTGTAGGCATAACAAGCAGTTTAGCGATTCCAAGTCACCGTTTATCAGCCTCGTCATCGCGTGATCGCTTTGAACCTGACAAAGCTCGGCTGCATGGGGATGGTGCGTGGTCACCCAGCGATGACGTCAATTCCAATGACTTCCTACAAGTAGACTTGCAGTACGAGTTCTTTATCTGTGCAGTTGCTACTCAGGGATACCCACTAACCTACAGAAGTTTCTGGACAACAAAATACAAATTGTTGTTTTCAGTTAACGGCAAAGATTGGCTCACCTATAAAGAAAATGGAACAGACAAGATCTTTAACGGAAATAGTGGGAGGGAGGATGTTGTAAAACATAGTCTTGTGAGTTTTACCAGGGCGAGTGTGTTGGCCTCTTGGCGATTACCATCTGCAGGCTCCTTACAAGGAATAAAGCTGCTGTATAAAATTTCTGACACTGAGGATCcattcactgccataaccattgttaacaactcaactcttaacacaagtattactggccttgcgaaattcacagagtatgaatttcacgtgctggcattcacaggcaatggcaatggaccagtgagcccagtaacagtagtgagaacaagtgaagacgtgccctcagagggtccaaagggactttcttttgtggagtggaatcaaaccacttactggatctcctggactcgactagcaatagagaagtggaatggcattactattgcacatgaaatattaattaaacatgagaaggcatcaaccgaagcaagatctaaaccatctattggagtcacttacaacacaggatcagcatacagctttgtcatcgtaactggccttaaaccgggatgcaactatagtatatctgtgcgagctttaacttcagttggaggcggaccctttggcgaaaaaaagacactaaaaatctcaagtaaaagatctcctgggctccgccggcaagagagaagagtaatggcataa

Transcript

amic_s0115.g38.t1

TTATTGCGTGAAATCAAAATTCAATGTTACATCAAGCGTAACGAGAAAAACATTCCACAGTTGAAATAAAAGCGAGCAATCATGGTGCAGGGAAATATGGAATTTAGTCGCTTGGTGATTTATCTTGCGTTGGGTGTTTCTTTTGTATCAGGAGTCTGCATTCATTTGGATCTTGGTATGGAAAATGGAGTCATTCCAGACAGCAAAATAACTGCTTCATCTGAACTGAATGCAGGAACGCCAGCAAAGAATGGCCGGCTGAACTACACAGCTGGACCATCTTGGTGCGCACAAACCAATGACAACAATCCATATCTACAGATTGATCTCCAATCCCTTCACGTCATATGTGCTGTATCATCTCAAGGGAATTCCAAAGCAGATGAATGGGTGGAGACCTACACAATAAAGATATCAACAGATGGTGTCCATTGGACAGATTACGACAACGATGGACACCCAAAGATTTTCTTCGGAAATAGTGACAGGAACAGTGAAGCGAAAGCTATCCTCGGAGTCGTAACTCGATGGCTACGAATTGTTGGGAAAACAAAACACAATAAGTTTTGTATGAGAGCAGAATTGTTTGGAGTGAAGCGTCACCCAGAAAACCTTGCGCTTAAGAAGACCGCAGCACAGTCATCCAGGCACAACGACTCCAGTGGAGCAAAAAACGCAGTGGATGGTAATCGAAATCCACTGTTTGATGCGAATGGTAACTGTGCCCTCACTCAAGAAGACGACCCCAGCTGGTGGCGAGTGGACCTGGGCACAAATCGTGTGCCAGTTTCAGATGTTTTTATTGTGAACCGTCTCTTTCCACCATCTGCGCTGCAAACTAATGGATATTACAATATCACTCTAGGTGATCACCCAAATGTTGAGCGAAATCTGGCGTGCGGTGGCCTGGTTCGGTTTAAAGATTTTATTGCTGCATCAGTGTGTTACAGGAATCCATTGAAGACTGGACGATACGTTGGTATTTTGACCACACAAGGGAGAAGTATCCTCTCGTTGTGTGAGGTAGAAGTTTATTCTAGAGAAAATCTTGCATTTAACAAACCAACAAAGATGATTGGCGGACCCCCGTGGCATCCTAGCAGCAAAGCTGTGGATGGTAATAGCCAAACAACATTTAGGTCTTGTACTCATACCCAGGAGGATTCCGATTTTCAAAATCCATGGTGGAGAGTAGACTTGGGACGAGTGGAGCCTGTAAATGAAGTGTACATTGTCAACCGGGGGGACTGCTGTGGGGATCGATTGAATCCATTTGAGATCAGAGTGGGTCCAGCGTCAAGTGATAATGGTATCACCAATCCTTTGTGTGGCAGTGGCCTCAGTGTTCCCCAAGGAAAAGGTGTTTCCTTCTTCTGTCGTCCTGCTTTGTTTGGACAGTATGTCACTATAAGAGTGACTAAAAAGGAAAGGTTGCCAGTGCACATTTGTGAAGTTGAAGTGTATTCTGCAAGAAGAGCTTGTCAGATGCAAGCTGTAGGCATAACAAGCAGTTTAGCGATTCCAAGTCACCGTTTATCAGCCTCGTCATCGCGTGATCGCTTTGAACCTGACAAAGCTCGGCTGCATGGGGATGGTGCGTGGTCACCCAGCGATGACGTCAATTCCAATGACTTCCTACAAGTAGACTTGCAGTACGAGTTCTTTATCTGTGCAGTTGCTACTCAGGGATACCCACTAACCTACAGAAGTTTCTGGACAACAAAATACAAATTGTTGTTTTCAGTTAACGGCAAAGATTGGCTCACCTATAAAGAAAATGGAACAGACAAGATCTTTAACGGAAATAGTGGGAGGGAGGATGTTGTAAAACATAGTCTTGTGAGTTTTACCAGGGCGAGTGTGTTGGCCTCTTGGCGATTACCATCTGCAGGCTCCTTACAAGGAATAAAGCTGCTGTATAAAATTTCTGACACTGAGGATCcattcactgccataaccattgttaacaactcaactcttaacacaagtattactggccttgcgaaattcacagagtatgaatttcacgtgctggcattcacaggcaatggcaatggaccagtgagcccagtaacagtagtgagaacaagtgaagacgtgccctcagagggtccaaagggactttcttttgtggagtggaatcaaaccacttactggatctcctggactcgactagcaatagagaagtggaatggcattactattgcacatgaaatattaattaaacatgagaaggcatcaaccgaagcaagatctaaaccatctattggagtcacttacaacacaggatcagcatacagctttgtcatcgtaactggccttaaaccgggatgcaactatagtatatctgtgcgagctttaacttcagttggaggcggaccctttggcgaaaaaaagacactaaaaatctcaagtaaaagatctcctgggctccgccggcaagagagaagagtaatggcataattattgcgcacgaaagcaaacggaaacaggcatcagctgtaggaagacccaaaccatccattgcagacaccacatacacaaacccggaaaacacctttcctttcataagtgccttttagctgggatgcaagtataacatatctgtgtcagctttcactgcagttagaggcggacccttagtcgaggagttgacattagaaatcttaagtaagcagttatcttccgtgactagagataggagcagttggttattaaagctctcgttagatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70490	Lactadherin OS=Rattus norvegicus OX=10116 GN=Mfge8 PE=2 SV=1
P21956	Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3
P49263	Pentraxin fusion protein OS=Xenopus laevis OX=8355 GN=pxn1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000101 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006585 all species →	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR051941 all species →	Family	Blood Group Antigen-Binding Lectin	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45713 all species →	FTP DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0115.g38.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.