Gene detail

Detailed information of amic_s0116.g10.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:138626...144874
NR annotation: XP_015780142.1, PREDICTED: synaptophysin-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0116.g10.t1

CGCCTGCGCCGCAAAAGTTGAAGGCGCGGACACATGAATATACCCGGACTTGCCCTTGTGTTGCCGAAATGGACAAAATGAAATTGAATGAAAAACCCAACATTGAAATTCTAAAGGAGCCGAAGGGATTTATAAAAGGCATTGAGCTAATCATCACTATCTTTGCATTTTCATTGGTGGCAGGCTTTATTGGCCGTTTTGCATTTGATGTTAAATGCAAGGGTAATCCCGCCTCTTTTAATGTTCATGGAGATTTCCCTTATCCATTTGATGACGTAACAATTTATACTACAACACCTTGTGAAAATATGACAACGAAAGGACTAAAGAGCTTGTCAGAGAAGGTTGACTACCGATCAGATGCTCAGTATTTTGTTTTCACCGGAGTGACGTCAATGTTATTTGTTCTTGTGGCTACTGGTTATTATGTGTTCTTTGAAGACAGAGCTAGAGATGCTACTTCCACTGATGTTGGCCTGCTCTCTTTTCCTGTTGTGGATTTTGTTTTTACGATTCTCCTGGTGGTGTTTTGGTTCACAAGCTCCATTGCTTGGGCAGCTGCAGTATCTGGCCTCAGGAATGCAACAAATCAGGAAAGTGTATTCAAGAACTATGTTGCATGTACAACCAATCCGTGTGAGTCCTTTGAGGGTGCAAGTTATGGAGCCCCTGTTGTTGCTGTGTTGCTTGGTTTCCTGAATGTCTTTGTATGGGGTGGAAATCTGTGGTTCCTTTTCAAAGAAACTCCTTGGCACAGCCCCAGAAGTTCTGGAGTGAAAGGTGGAGAGATACCCCAGCAGGATCCACCTCACCAAGATACTCCCTCAGCCATTTAATTACCAACAAGGATGATGCCTTTTTTGTGAATGACAGTGCCTATTATATGTAATACCCTGTCTTGTCAAAAGTAATATTCAGAAGCTTAAGACTTTAGATTCGTCAGAGTAGCCTACTGTATGATACATTGAGTTTTGCTTTACTTGTCTGCAATGTTGCAAGAGTGCAAGGTTTCACTTTGTAGTTGCTAAATTATTTACAGGCAattattaattattattattattatGTAATCTCAGGATATATTTCTTCACTCAAAGGAAAATGTAGACTTCTTTCAATTTGTTCAATGAGGGTGTCAGTTATTGATGCTTTCATGTGCTAACCATTTCAGAAATAGAAATTATTATTGATCCTTTGCAGATGCAGATCCAGGGTGGGTTTTTTTCCTCTTTTGGACTAAAGTCGAGGCCTTTACAGCTGAAGCATGCTACAGTAACTAAAGCCCAGAAGAGGGCGTTTTTTTTTAGGGTTGGTCCCCTCCCTCCTCCCCTCACTCATCTCTTGGTCTGGATCTGTAACTGTTTCACCAGCTGAAGTATCTGAAATATCTGTGCTTGCTGTTTCATTTAAAAATTTCTTTTGAAGAGGATCGTTGATTGAAATGAGTGATTCTCCTGTGACAAATTGTAAGTTCTTTGGAGCATCTATTTAAGTTAGCATTTGTATGAGTGCTTTTTCTTTAATAACACATCATCAAAAATTGAAAATGCCCAGAATCTAAGTCAGTCTGTGAGCACTAACATTGTTATTGTCCCTCAAGCTGCTTAGTGATCCAGAAAACCCTTATGATATAACTAATTGCATTGGCACACTTTGACAAGGACATCATTCATTTGAAaataattccaataataataataattattattatTGCTGTGCAATCTCTTCATGAAGAACAGCAACTTTGCTGCTAAAATCAATGAGAAAGTTTTTGGAGGATTGAGTTTTAACAAGAAAAGAATTTGTATACCATTAGAGGAAGTGAAAAATAATTGTTCAAGGTATAAGTCAAATAGCAATTCCTATATCTTCCATTTTAATATCCGTTCTATTATGTAGTTATTAGTAGAGAATACTTGTAAACTTACTCTAAATAGAAGGATTACTTCAATTAGTAGATGTGGAATCAACTGGCTGTGATAGCATGTGATTAAAGAGTTCTTAGCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07825	Synaptophysin OS=Rattus norvegicus OX=10116 GN=Syp PE=1 SV=1
Q62277	Synaptophysin OS=Mus musculus OX=10090 GN=Syp PE=1 SV=2
Q5YJC1	Synaptophysin OS=Spermophilus citellus OX=9997 GN=SYP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007373 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01284 all species →	MARVEL	Membrane-associating domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008253 all species →	Domain	Marvel domain	Interproscan
IPR001285 all species →	Family	Synaptophysin/synaptoporin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10306 all species →	SYNAPTOPHYSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g10.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.