Gene detail

Detailed information of amic_s0116.g13.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:200976...207992
NR annotation: XP_029201633.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g13.t1

ATGGCTTCCAATCTTCTCACTCTTTACTGCAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAGGACAAAGAAGACGCAGCATATGCAACGATTAGGAAAATCCCTAACGCTAACCCTAAGAAAGTTGCCTTTTGTCCTTACAGAATTCTTTGCAAACAATGCAACCATCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCATTGATTTGTTTCAAGATCGAAAACGTTCATTTTCGACGAGGATACGAACAAATTAAAGGAAGGAAACTTAAATACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAACAGTAAATAACAGAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAAGATGACATTCTGTCCCTGACGAAAGATAGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGCTGGTATACCTTCCCACAGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCGCTGGTTTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGGCGTTTCCCAGGGGATAAAGCGCGCTGGATGGCAACCGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACAAGTCAGATACTGTTAAACCTGATGGCTGAAGAGTGCACCGTATTGAGCATGTCTGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTAACCACAGCTATAATCAGATCATGAGGGATTTCTACAAGAAAACTAACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCTGGCACAGATAAACTTGAAACCACAAGAGAGAACCTGGAAACTTTACTGTCAAATCTGTGCGCATGCGCACGAATGCCATTACGCTCAAGGGATTTGGAATGGTACTGTAATCAACCAGAAACGTCATACAAAGTGATTCCGTTGAACTTCAAGCAAAGCCAACTGCAATCGGATATCGAGCGGTACCTCAGTTCCATTTCAAGCGTTATTGAAGAAGAAGCAAGATATCCTAAAGCATTGGATGGTTTGAATGTGTTATCACAATTTTACCGTGGAGCTTTGCGGAAGTTTATCGAACGTTGTCATGGTGACAAGACCCGAATCAAGGGTTTAGCGATCGCTGAACATGCTATGCAAATACTCAGTGTCACTGAGGTAAACAACATTTTAGGCCATGAGTATGCAGTGGAATGCTTCGAAGAATGCATCAAACAACTTCATACTGCAACCTCCCCCATGGAAAAACTGAAGAAAACGCTCGTTGGTTCATCAGAGTCACTGGAGCTTCTAGAATCTTCGATCAGCGGGATAAGCCGAGTCTCAAACCTTTTTATTACAAGCGATAGGTATAAATGCTTAGTTGACGAACTCGAGAAGTTTATTGGTCAAGTTGAACAAGACAAAACTTCAAGAGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTGAGCGTCTAACACAAGAAAGAGAAATTTGTCAAAAACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAGAGGAGAGCAGGAGGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAGCTCCTAGTCAGCACGAGTGTGTTGGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGGTTTGATAGCAGTCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCAATGAAAAAGAAGAAATGCTTGCACGTGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACACCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTCGGATTAAAAAACCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGATATGGGGAATGACTTCAGTGAAGAAACATGGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCCGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAAAAAAGGCGAATCTATGGAGATGACGAAGACGACAGATGAGACCTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAACAACAAAGACAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACGGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCAAAGAAACCCAAGGATTACAAGCCAGTAATGCATGATTTGAAGACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCGATGATGACAATAACGACTTTGAAGACTGGTACTACGGAGAGAACGATTCCGATTCCGGCCTTGATCACGAAAACATTGACGAGTTTACGAGCGAGTCCGAAGACAGTGAGGCGTTAGATCATTCAAAGAAAGGAGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCAACCATTGCCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGAGGAAGAATCACTTCTAAATTCAATCATTTGCTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTCCTGTGTGCCAATGTCCGTGATGAGGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAATGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCATATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACTTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTAACAGATGTAAAACGCAACATTGTTTTCTGGAGCTTTCTACGGTCTCAGTGA

Transcript

amic_s0116.g13.t1

GGATGATCGTCGCGATCGGGTGAACCTTTTAGAGAAGAAGCTGAAAAGCACGAAAAAAAAAACAAACAACTCGAATGGAAGTTGATTGTACAAAAGTTATGATTGATATGGCCTGCTGAGGTCCGACTCGAGGATTACAATTGGCGTGGCACCTCATTGGTGATCTATGAGGTGAACCATTCCTGGCGGGAAAAATACCATGGCTTCCAATCTTCTCACTCTTTACTGCAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAGGACAAAGAAGACGCAGCATATGCAACGATTAGGAAAATCCCTAACGCTAACCCTAAGAAAGTTGCCTTTTGTCCTTACAGAATTCTTTGCAAACAATGCAACCATCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCATTGATTTGTTTCAAGATCGAAAACGTTCATTTTCGACGAGGATACGAACAAATTAAAGGAAGGAAACTTAAATACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAACAGTAAATAACAGAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAAGATGACATTCTGTCCCTGACGAAAGATAGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGCTGGTATACCTTCCCACAGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCGCTGGTTTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGGCGTTTCCCAGGGGATAAAGCGCGCTGGATGGCAACCGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACAAGTCAGATACTGTTAAACCTGATGGCTGAAGAGTGCACCGTATTGAGCATGTCTGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTAACCACAGCTATAATCAGATCATGAGGGATTTCTACAAGAAAACTAACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCTGGCACAGATAAACTTGAAACCACAAGAGAGAACCTGGAAACTTTACTGTCAAATCTGTGCGCATGCGCACGAATGCCATTACGCTCAAGGGATTTGGAATGGTACTGTAATCAACCAGAAACGTCATACAAAGTGATTCCGTTGAACTTCAAGCAAAGCCAACTGCAATCGGATATCGAGCGGTACCTCAGTTCCATTTCAAGCGTTATTGAAGAAGAAGCAAGATATCCTAAAGCATTGGATGGTTTGAATGTGTTATCACAATTTTACCGTGGAGCTTTGCGGAAGTTTATCGAACGTTGTCATGGTGACAAGACCCGAATCAAGGGTTTAGCGATCGCTGAACATGCTATGCAAATACTCAGTGTCACTGAGGTAAACAACATTTTAGGCCATGAGTATGCAGTGGAATGCTTCGAAGAATGCATCAAACAACTTCATACTGCAACCTCCCCCATGGAAAAACTGAAGAAAACGCTCGTTGGTTCATCAGAGTCACTGGAGCTTCTAGAATCTTCGATCAGCGGGATAAGCCGAGTCTCAAACCTTTTTATTACAAGCGATAGGTATAAATGCTTAGTTGACGAACTCGAGAAGTTTATTGGTCAAGTTGAACAAGACAAAACTTCAAGAGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTGAGCGTCTAACACAAGAAAGAGAAATTTGTCAAAAACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAGAGGAGAGCAGGAGGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAGCTCCTAGTCAGCACGAGTGTGTTGGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGGTTTGATAGCAGTCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCAATGAAAAAGAAGAAATGCTTGCACGTGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACACCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTCGGATTAAAAAACCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGATATGGGGAATGACTTCAGTGAAGAAACATGGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCCGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAAAAAAGGCGAATCTATGGAGATGACGAAGACGACAGATGAGACCTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAACAACAAAGACAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACGGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCAAAGAAACCCAAGGATTACAAGCCAGTAATGCATGATTTGAAGACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCGATGATGACAATAACGACTTTGAAGACTGGTACTACGGAGAGAACGATTCCGATTCCGGCCTTGATCACGAAAACATTGACGAGTTTACGAGCGAGTCCGAAGACAGTGAGGCGTTAGATCATTCAAAGAAAGGAGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCAACCATTGCCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGAGGAAGAATCACTTCTAAATTCAATCATTTGCTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTCCTGTGTGCCAATGTCCGTGATGAGGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAATGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCATATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACTTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTAACAGATGTAAAACGCAACATTGTTTTCTGGAGCTTTCTACGGTCTCAGTGAAAAGGCTAAAAACGAATTGGTCTTTCATTGACGCTCCTTCGCTCAACGATACTTCAAACTCAACAAATACAACCCTTCCTTTTTTTCTTGCTTTTCTCAGTGCCTGCTGAGGTTTTACCATTGAATCCGGGAATTTACGCCGGGGAACCAAACGGGCTTCATAAGGCGTCCCTTCATTATGCGTGTTCTTAGTTTGTGGATCTCAATTTACAAAAGATTTTAATGTTCAGCCATCTTTGTTGAGTTGCAATATACCTAAAATTTAACATGAACTGTCCGCCAAAATTATGTAATGATCCTTTTCAGTACAACTTCAGAAAATAACGGCTGGGAATATGAAGTTTCTTTCGGCGAGAATCTATAAATTGACTCTTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7S8J7	Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
Q0CEI2	Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Q9SP32	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g13.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.