Gene detail

Detailed information of amic_s0116.g16.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:221676...236459
NR annotation: XP_029201633.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g16.t1

ATGGCTTCCAATCCTCTCACTCTTTACTGTAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAAGACAAAGAAGACGCAGCATATGAAACGATTAGGAAAATCCCTAACCCTAACCCTAACCCTAAGAAAGCTGCCGTTTGTCCTTACAGAATTCTTTGCAAACAATGCAATGAGCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCCTTGATTTGTTTTAAGATCGAAAACGTTCATTTTCGACGGGGATACGAACAAATTAAAGGAAAGAAACTTAAATACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAATAGTAAATAATAAAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAGGATGACATTCTGTCCCTGACGAAAGATTGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGTTGGTATACCTTCCCACGGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCACTGGTCTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGCCGTTTCCCAGGGGATAAAGCACACTGGACGGTAACTGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACGGGTCAGATACTGTTAAACCTGATGGCTAAAGAGTGCCCCGTACTGAGCATGTCCGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTGATCACATCTATAATCACATCATGAGGGATTTTTACATGAAAACTAACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCAGGCACGGATAAACTTGAAACCACAAGAGAGAAACTTAAAACTTTACTGTCAAATCTATGCGCATACGCACGAATGCCATTACGCTCAAGGGATTTGGAATTGCACTGTAATCGACCAGAAACGTCGTACAAAGTGACTCCGTTGAACTCCAAGCAAACCCAACTGCAATTGGATATCGAGCGGTACCTCAACTCCATTACAAGCCTTATCGAAGAAGAAGCAAAACGTCCAAAAGCGTTGGAGGATTTAAATGTATTATCACAATGTTACCGAGGAGCTTTGCGGGATTTAATCAAAAGTTCTCATGGTGACAAGTCCCGAATCAAGAGTTTAGCGATAGCGGAACATGCCATGCAAATACTCAGTGTCAATGAAGTAAGCAACGTTTTAGGCCATGAGTATGCTGTGGAATGTTTCGAAGAATGCATCAAACAACTTCAAACTGCAGCCTCCCCCATGGAAAAACTGAAGAAAATGCTCGTTGGTTCATTGGAGTCACTGAAGCTTCTAGAATGTTCGATCAGCGAGCTAAGCCGAGTCTCAAACCTTTTTAGTACAAGCGATAGGTATAAATACTTAGTTGATGAACTCAAGAAGTTTACCCGTCAAGTTGAACAAGACCAAACTTCAAGGGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTGAGCGCCTAAGGCGAGAAACAGAATTTTGTCAACGACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAAAGGAGAGCAGGAAGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAGCTCCTAGTCAGCACGAGTGTGTTAGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGCTTTGATAGCAGCCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCGATAAAAATGAAGAAACGCATGCACGCGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACACCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTAGGAGTGAAAAGCCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGACATGGGGAATGACTTCAGTGAAGAAACATTGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCTGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAGAAAAGGAGAATCTGTGGAGATGACGAAGACGACAGATGAGACCTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAATAACAAAGATAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACTGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCACAGAAACCCAAGGATTACAAGCCAGTAATGGTAATTAAGCCAGACATGATGAGCCTGGGGTACTTTCGGAGTGAATCCCAATACTGCCAACACTGGCCAATTAAGAATTCCAAACTTGAAAACATTCGAATTGCTTTTCAGCATGATCTGAAAACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCGATGATGACAATAACGACTTTGAAGACTGGTACTACCGAGAGAACGATTACGATTCCGGCTTTGATCACGAAAACATTGACGAGTTTACGAGCGAGTCCGAAGATAGTGAAATGTTAGACGACGACGATTATTCAACTGCGGAACATTCAAAGAAAGGGGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCAACCATTGCCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGAGGAAGAATCACTTCTAAATTCAATCATTTGCTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTCCTGTGTGCCAATGTCCGTGATGAGGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAATGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCATATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACCTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTTGCTAAAACAATTGCGCTTGATTTCACTCCATCTGCCATCCAAATCCGATTTGCTGGTTTTAAAGGAGTCCTGGCATTAGATCCCACACTTTCAGGAAAGACGGCAGTATTTCGTCCGAGCATGCGTAAATTCGAGAGTCCTCACCGCCGACTAGAAGTACTACAGACCTCTCGTCCCCAGCCTGTTTTCTTAAATCACCAGCTGATAATACTACTGTCAAGCCTCGGAATCCCGGATGAAGTCTTCATAAATCTGCAGCGCAGGATGTTGGACAGACTGGCTGGGATGCTTGTCGATGAAAAACTGGCTACTCTACAGTTGGTGTCAGGAGCGAAGACAGGCATCGGATATAAGCGCCTATCAGAAGCGGGATTACTACTGACGAACGAACCTTTCTTCAAGTCTTTACTCGTTGCATTGTACAAAGAACGAATGCAGAATCTATTTAAGCGTGCCCGCATTCTCCTGCCGACTTCAGAAGCTCGCCTTATGATCGGTGTCATGGACGAAACAGGAATTCTGAAGCCAGGACAGGTATTTGTCCAGTATTCTCTTGTCTCGAACGAAGCTGACCGATTTATGGAATTCAGTAAATCCTCAAGTCAAATCTTAACAGGACCAGTAGTCGTCACAAGAAATCCTTGTCTTCATCCGGGTGATGTGAGACAACTGACAGCTGTATCTGTGCCTCAGCTTGCTCATTTTGTCGACTGTATTGTGTTTCCTAATCATGGACCGCGGCCACACCCAAGTGAAATGGCAGGTGGCGACCTCGATGGTGATATGTACTTTGTCTCGTGGATGAAGAACCTTCTCCCCAAAAAGCCTCTATTTCCGCCAATGAACTACATAGCACCCCCCAAAAAAGAAGTTAAAGAACCAATCACAGTCAGCCACATGACCATGTTTGTCGCCGAGTATATCCGGTATGACCAGCTTGGAGTGATTGACAATGCGCACAAAGCTCAAGCCGATTCCCAGGAGGGAGGTGTGAAATCGCCACTTTGCCTGGATTTGGCGGAACGACACTCGAGAGCTGTTGACGCTCCAAAGACAGGCGATTGGCCTGAAATGCCAAAAGAAGCCAAGGTTACAGTTTTTCCCGATTTCATGATGAAACCCGACAAACCGAGCTATGCATCGGACAAAGTGTTGGGAAAGTTGCACCGCGAGTGTAGAGCGTTTAAGGACAATATCGCGCGGGATATCCCGCAAAAGAAACCACACGTTGATCCAGACTTGCTAATACCAGGCTTTCAGCAATACCAAGAGGAGGCGAGGGCAACGTACGAGGAGTATTCCAACCAGCTTCAAGCATTGATGAACCTGTACTGTATTGAAACAGAGGGCGAGCTCATCTCGGGTTGTTTTTCCAAGTTTCATTCTCGCATTGGAAGAGAAAAATTCGAGATTGCCCAAATCATCAGTCGATTCCTTAGGAAGATGCGTGAGAACTTCAGAGAGAAGTTCTTCGAAGAATTTGATGATATGGTCGACGACGACAACGACATTACCCTTGAGATGCAAAAAAAGGCTTCGGCGTGGTATTACGTTGCATATGGTTTCAGAAATGTCAGCAATGCGGCAGAAAATACCCCAGAGGACTCCACTCAAACGCACTTTCTGAGCTTCCCCTGGTTGGTGGATGATGTTATGCTCAGGATCACACTCGGTAGAGTATTTAAAATAGAAGAATCCGGCGGTCTAGTTTCTTCCATAAGTGAAAGTGTTTTCGACGAGTTTGAAAAAGAAAGAGATACGCTTTTGTGTGATTTTAAAGACAGGATACATAAAAAGAATTTTATCAGGAAAGCTATGCCTGGAGTAAAAGCATTGGCCATGTTTGGTTCCTCAGCCACATTCCTTTTCCGTAAACACTCGGACCTTGACCTTTGTATTCTTTCTTCCTCGGACATTGAAAACCATGAAGAACTGGAACAAAAGGAACAGATTGCTGAATTGAAGCGATTTCTCCCGACAATGAGGAAACTATTTAAGCGGGTGCGGATGGTGGAATCTGCTACGGTACCGGTGATCATTGGCAACAATCCAGCTAAGCGAGGTGGTGTCATAGCCAATGTCAAAGCGGATCTGACTGCATCTTGCCACGGTCTACTCAAATCCATTGTACTGAGCAATTACATCAAGTCCTACCCAGTTCTCTTGCCAATTCTCCGTCTCCTTGTACACTGGGGTGATGTCACAGGTATCGCAGGACATGGCGTCGAGGCAGGAATCAAGTCAACCATGTTGGTGTTTTTGATGCTGATATTCTGCGTTTCAAAAGGCTTGATCGAGAATTTCGATTTGATGCAAGTCTGGAAACAGTGCTTTCAGATTTCAACTGGACAAATCAAGGATTTAGATTTTCTCCAACAATGGGAGGGAGTCATTGCAAGTTTGCAGTCAAAGGTTACCAAGCTGAAGGGTAACGAAAATACCCCGATTACACTCCGTGATCAGCAAATTGGCGAGATTCTTCTCACCTTCTTTCAAGAGTATAACGCTATACTTGACATGGAAATTCCACATACTTTTGCCTCTCTCCTAGGAGTCAGCAAACTGGCCGAACTTCTGGACCCAGACCATTTACGCCAGCTGAAGGAACACATGCAAAGAGCTTTCCATCTTTTGGCGCTTTACAGAGATGCCGAAGTGCTTCTCACGGTCAGCGCTTCAGAAATAGATCGTGTCATTTTCCTGTCAGAGACGCTGTCCTACGCGATGGCTGGCTCAGAGAGATACAACGCTTCCCAGCTGTCAAAAAAGACTGGAGCGAGGGTAACAATTCGACCAAGTCTCCCTGGATCAGCATTTGGTCTCGTTCTGCAGGCGATTGGTACGGAGTTTGCTGTCGCAGCAGTTGAACGGACGCTGAGTACCATGGCAACGCAGGCATTGCGCAACAAGGCTGTAATTATGTCAGTGTGCTTTGTAAAGGAAGCAAAACAAATGCTATTTGAAGGTTGCCTGAGTGACGATGACCGAGTTTCCTTTGTACCTTACTATGGCAATCACCACTCGACACATGACAGTCTGGCTTTGTATGTTCCACTGCTTTCAAACCAGAGAACTGACCTTCAAAGAATTGGAGAAGATTACACTCGGCATGAGTTCATATGTTTCCAGGAAAAATTTCTCACTCAAGCTCAGGTCATTGAAAGAGATTTTGTACAATCCATTTACGGAAAGATGGAGTTTGCAATACATTTTGGGCGCATATATGTTTTAAACATCCCAAAAACATTCACAGAAGACAGCGAACCACCAAGCGTGGGAATCTTCCAAACAAATCTCACACGAGGTTATAAACCTCGACCAAGCGTCCTTTCAGTGCCTAGCAACATCAGAAAATTTGGGAAAACGCGTAGGAGACAAAACAAAGGAAAATCCCAGCACTGGAATAAGAAAGGTAAAGTCTTTGAAATTGGAGAAGACGGAAAAAAGATCCCAAAGGAAAAGGCTTCCCGAAGCTCTTTTTTCACATTGGTTTCTTCACAAGAGAAAGCCGTGGATTTCCTGACTCAAAGAGGTTTTTCAGAAGCACAATCATCATCTTCGGAGTTTTACTCGGTTGAAATTCATACAGATCACGAATTCTGCGTGGTCACAGATAAAGATTTCAACTTCCAGAAAATTAAATTGCCGAAACTACGTTGGTGTGCGGTGGACATAAAACGAGCGTGGAAAGAGAATCCTGAAAAGAAGGACGACACTGAATTAGACGGCGTAGAGACTGACGTCCGCTTCATTTTGCAGAGCAGCCGTGAATTAAGTGCAACTGACATCCGAGAAACTGATTACGAGCAGTACAGAGATACATTGCAGCCGTTGAAGCCTCACCGCCAACCTCAAACAATCAGCTGTCCATTCCAGATTAAACAGGACATCTGGAAAAACGTCTCTTTGATTCGTCACAAAAAGTCCCGGATGTACACACTTGACGAGTCAGTGGATTTTGAAAGCGACTTTAAGAGGTCTCTTTGTGTCAATGTGAACGAAATCACCGAGTATTCGCGTCCCAAAAGGAATGCTTCAGAGTTTAATCAGGTGTTCACGCGATATGAAGTTCTCGTGAAAGCTGGCTTACCTTGCAGCTGGAGTAACACTGAATCAGTCGAAAAACTTTTGCGTGAAATCTGGTGCTTCGGTTTTGACTTTGCTTCACATTTGTCTGAATAG

Transcript

amic_s0116.g16.t1

ACTAGGAAGTAAGTAATGAGTTTCTAATAACAATTGACGTGGCACCGCAGAGGTGAACTCAGAGGTGAATCATTCCTGGCGGGAGAAATACCATGGCTTCCAATCCTCTCACTCTTTACTGTAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAAGACAAAGAAGACGCAGCATATGAAACGATTAGGAAAATCCCTAACCCTAACCCTAACCCTAAGAAAGCTGCCGTTTGTCCTTACAGAATTCTTTGCAAACAATGCAATGAGCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCCTTGATTTGTTTTAAGATCGAAAACGTTCATTTTCGACGGGGATACGAACAAATTAAAGGAAAGAAACTTAAATACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAATAGTAAATAATAAAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAGGATGACATTCTGTCCCTGACGAAAGATTGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGTTGGTATACCTTCCCACGGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCACTGGTCTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGCCGTTTCCCAGGGGATAAAGCACACTGGACGGTAACTGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACGGGTCAGATACTGTTAAACCTGATGGCTAAAGAGTGCCCCGTACTGAGCATGTCCGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTGATCACATCTATAATCACATCATGAGGGATTTTTACATGAAAACTAACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCAGGCACGGATAAACTTGAAACCACAAGAGAGAAACTTAAAACTTTACTGTCAAATCTATGCGCATACGCACGAATGCCATTACGCTCAAGGGATTTGGAATTGCACTGTAATCGACCAGAAACGTCGTACAAAGTGACTCCGTTGAACTCCAAGCAAACCCAACTGCAATTGGATATCGAGCGGTACCTCAACTCCATTACAAGCCTTATCGAAGAAGAAGCAAAACGTCCAAAAGCGTTGGAGGATTTAAATGTATTATCACAATGTTACCGAGGAGCTTTGCGGGATTTAATCAAAAGTTCTCATGGTGACAAGTCCCGAATCAAGAGTTTAGCGATAGCGGAACATGCCATGCAAATACTCAGTGTCAATGAAGTAAGCAACGTTTTAGGCCATGAGTATGCTGTGGAATGTTTCGAAGAATGCATCAAACAACTTCAAACTGCAGCCTCCCCCATGGAAAAACTGAAGAAAATGCTCGTTGGTTCATTGGAGTCACTGAAGCTTCTAGAATGTTCGATCAGCGAGCTAAGCCGAGTCTCAAACCTTTTTAGTACAAGCGATAGGTATAAATACTTAGTTGATGAACTCAAGAAGTTTACCCGTCAAGTTGAACAAGACCAAACTTCAAGGGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTGAGCGCCTAAGGCGAGAAACAGAATTTTGTCAACGACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAAAGGAGAGCAGGAAGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAGCTCCTAGTCAGCACGAGTGTGTTAGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGCTTTGATAGCAGCCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCGATAAAAATGAAGAAACGCATGCACGCGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACACCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTAGGAGTGAAAAGCCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGACATGGGGAATGACTTCAGTGAAGAAACATTGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCTGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAGAAAAGGAGAATCTGTGGAGATGACGAAGACGACAGATGAGACCTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAATAACAAAGATAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACTGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCACAGAAACCCAAGGATTACAAGCCAGTAATGGTAATTAAGCCAGACATGATGAGCCTGGGGTACTTTCGGAGTGAATCCCAATACTGCCAACACTGGCCAATTAAGAATTCCAAACTTGAAAACATTCGAATTGCTTTTCAGCATGATCTGAAAACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCGATGATGACAATAACGACTTTGAAGACTGGTACTACCGAGAGAACGATTACGATTCCGGCTTTGATCACGAAAACATTGACGAGTTTACGAGCGAGTCCGAAGATAGTGAAATGTTAGACGACGACGATTATTCAACTGCGGAACATTCAAAGAAAGGGGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCAACCATTGCCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGAGGAAGAATCACTTCTAAATTCAATCATTTGCTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTCCTGTGTGCCAATGTCCGTGATGAGGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAATGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCATATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACCTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTTGCTAAAACAATTGCGCTTGATTTCACTCCATCTGCCATCCAAATCCGATTTGCTGGTTTTAAAGGAGTCCTGGCATTAGATCCCACACTTTCAGGAAAGACGGCAGTATTTCGTCCGAGCATGCGTAAATTCGAGAGTCCTCACCGCCGACTAGAAGTACTACAGACCTCTCGTCCCCAGCCTGTTTTCTTAAATCACCAGCTGATAATACTACTGTCAAGCCTCGGAATCCCGGATGAAGTCTTCATAAATCTGCAGCGCAGGATGTTGGACAGACTGGCTGGGATGCTTGTCGATGAAAAACTGGCTACTCTACAGTTGGTGTCAGGAGCGAAGACAGGCATCGGATATAAGCGCCTATCAGAAGCGGGATTACTACTGACGAACGAACCTTTCTTCAAGTCTTTACTCGTTGCATTGTACAAAGAACGAATGCAGAATCTATTTAAGCGTGCCCGCATTCTCCTGCCGACTTCAGAAGCTCGCCTTATGATCGGTGTCATGGACGAAACAGGAATTCTGAAGCCAGGACAGGTATTTGTCCAGTATTCTCTTGTCTCGAACGAAGCTGACCGATTTATGGAATTCAGTAAATCCTCAAGTCAAATCTTAACAGGACCAGTAGTCGTCACAAGAAATCCTTGTCTTCATCCGGGTGATGTGAGACAACTGACAGCTGTATCTGTGCCTCAGCTTGCTCATTTTGTCGACTGTATTGTGTTTCCTAATCATGGACCGCGGCCACACCCAAGTGAAATGGCAGGTGGCGACCTCGATGGTGATATGTACTTTGTCTCGTGGATGAAGAACCTTCTCCCCAAAAAGCCTCTATTTCCGCCAATGAACTACATAGCACCCCCCAAAAAAGAAGTTAAAGAACCAATCACAGTCAGCCACATGACCATGTTTGTCGCCGAGTATATCCGGTATGACCAGCTTGGAGTGATTGACAATGCGCACAAAGCTCAAGCCGATTCCCAGGAGGGAGGTGTGAAATCGCCACTTTGCCTGGATTTGGCGGAACGACACTCGAGAGCTGTTGACGCTCCAAAGACAGGCGATTGGCCTGAAATGCCAAAAGAAGCCAAGGTTACAGTTTTTCCCGATTTCATGATGAAACCCGACAAACCGAGCTATGCATCGGACAAAGTGTTGGGAAAGTTGCACCGCGAGTGTAGAGCGTTTAAGGACAATATCGCGCGGGATATCCCGCAAAAGAAACCACACGTTGATCCAGACTTGCTAATACCAGGCTTTCAGCAATACCAAGAGGAGGCGAGGGCAACGTACGAGGAGTATTCCAACCAGCTTCAAGCATTGATGAACCTGTACTGTATTGAAACAGAGGGCGAGCTCATCTCGGGTTGTTTTTCCAAGTTTCATTCTCGCATTGGAAGAGAAAAATTCGAGATTGCCCAAATCATCAGTCGATTCCTTAGGAAGATGCGTGAGAACTTCAGAGAGAAGTTCTTCGAAGAATTTGATGATATGGTCGACGACGACAACGACATTACCCTTGAGATGCAAAAAAAGGCTTCGGCGTGGTATTACGTTGCATATGGTTTCAGAAATGTCAGCAATGCGGCAGAAAATACCCCAGAGGACTCCACTCAAACGCACTTTCTGAGCTTCCCCTGGTTGGTGGATGATGTTATGCTCAGGATCACACTCGGTAGAGTATTTAAAATAGAAGAATCCGGCGGTCTAGTTTCTTCCATAAGTGAAAGTGTTTTCGACGAGTTTGAAAAAGAAAGAGATACGCTTTTGTGTGATTTTAAAGACAGGATACATAAAAAGAATTTTATCAGGAAAGCTATGCCTGGAGTAAAAGCATTGGCCATGTTTGGTTCCTCAGCCACATTCCTTTTCCGTAAACACTCGGACCTTGACCTTTGTATTCTTTCTTCCTCGGACATTGAAAACCATGAAGAACTGGAACAAAAGGAACAGATTGCTGAATTGAAGCGATTTCTCCCGACAATGAGGAAACTATTTAAGCGGGTGCGGATGGTGGAATCTGCTACGGTACCGGTGATCATTGGCAACAATCCAGCTAAGCGAGGTGGTGTCATAGCCAATGTCAAAGCGGATCTGACTGCATCTTGCCACGGTCTACTCAAATCCATTGTACTGAGCAATTACATCAAGTCCTACCCAGTTCTCTTGCCAATTCTCCGTCTCCTTGTACACTGGGGTGATGTCACAGGTATCGCAGGACATGGCGTCGAGGCAGGAATCAAGTCAACCATGTTGGTGTTTTTGATGCTGATATTCTGCGTTTCAAAAGGCTTGATCGAGAATTTCGATTTGATGCAAGTCTGGAAACAGTGCTTTCAGATTTCAACTGGACAAATCAAGGATTTAGATTTTCTCCAACAATGGGAGGGAGTCATTGCAAGTTTGCAGTCAAAGGTTACCAAGCTGAAGGGTAACGAAAATACCCCGATTACACTCCGTGATCAGCAAATTGGCGAGATTCTTCTCACCTTCTTTCAAGAGTATAACGCTATACTTGACATGGAAATTCCACATACTTTTGCCTCTCTCCTAGGAGTCAGCAAACTGGCCGAACTTCTGGACCCAGACCATTTACGCCAGCTGAAGGAACACATGCAAAGAGCTTTCCATCTTTTGGCGCTTTACAGAGATGCCGAAGTGCTTCTCACGGTCAGCGCTTCAGAAATAGATCGTGTCATTTTCCTGTCAGAGACGCTGTCCTACGCGATGGCTGGCTCAGAGAGATACAACGCTTCCCAGCTGTCAAAAAAGACTGGAGCGAGGGTAACAATTCGACCAAGTCTCCCTGGATCAGCATTTGGTCTCGTTCTGCAGGCGATTGGTACGGAGTTTGCTGTCGCAGCAGTTGAACGGACGCTGAGTACCATGGCAACGCAGGCATTGCGCAACAAGGCTGTAATTATGTCAGTGTGCTTTGTAAAGGAAGCAAAACAAATGCTATTTGAAGGTTGCCTGAGTGACGATGACCGAGTTTCCTTTGTACCTTACTATGGCAATCACCACTCGACACATGACAGTCTGGCTTTGTATGTTCCACTGCTTTCAAACCAGAGAACTGACCTTCAAAGAATTGGAGAAGATTACACTCGGCATGAGTTCATATGTTTCCAGGAAAAATTTCTCACTCAAGCTCAGGTCATTGAAAGAGATTTTGTACAATCCATTTACGGAAAGATGGAGTTTGCAATACATTTTGGGCGCATATATGTTTTAAACATCCCAAAAACATTCACAGAAGACAGCGAACCACCAAGCGTGGGAATCTTCCAAACAAATCTCACACGAGGTTATAAACCTCGACCAAGCGTCCTTTCAGTGCCTAGCAACATCAGAAAATTTGGGAAAACGCGTAGGAGACAAAACAAAGGAAAATCCCAGCACTGGAATAAGAAAGGTAAAGTCTTTGAAATTGGAGAAGACGGAAAAAAGATCCCAAAGGAAAAGGCTTCCCGAAGCTCTTTTTTCACATTGGTTTCTTCACAAGAGAAAGCCGTGGATTTCCTGACTCAAAGAGGTTTTTCAGAAGCACAATCATCATCTTCGGAGTTTTACTCGGTTGAAATTCATACAGATCACGAATTCTGCGTGGTCACAGATAAAGATTTCAACTTCCAGAAAATTAAATTGCCGAAACTACGTTGGTGTGCGGTGGACATAAAACGAGCGTGGAAAGAGAATCCTGAAAAGAAGGACGACACTGAATTAGACGGCGTAGAGACTGACGTCCGCTTCATTTTGCAGAGCAGCCGTGAATTAAGTGCAACTGACATCCGAGAAACTGATTACGAGCAGTACAGAGATACATTGCAGCCGTTGAAGCCTCACCGCCAACCTCAAACAATCAGCTGTCCATTCCAGATTAAACAGGACATCTGGAAAAACGTCTCTTTGATTCGTCACAAAAAGTCCCGGATGTACACACTTGACGAGTCAGTGGATTTTGAAAGCGACTTTAAGAGGTCTCTTTGTGTCAATGTGAACGAAATCACCGAGTATTCGCGTCCCAAAAGGAATGCTTCAGAGTTTAATCAGGTGTTCACGCGATATGAAGTTCTCGTGAAAGCTGGCTTACCTTGCAGCTGGAGTAACACTGAATCAGTCGAAAAACTTTTGCGTGAAATCTGGTGCTTCGGTTTTGACTTTGCTTCACATTTGTCTGAATAGCTATGTGACTTAACCAGGGCTCGAAAACTTGGAGGTCACACTTTCGAGACTAGAGGTAAAATTTTAGTCGCAATACGGAAAAAGTTGGTAGAAATTTTGCGGAACAAAGTTTATGGTTTCAA

Protein

amic_s0116.g16.t1

MASNPLTLYCNKCNSSLATSDMMMLATVPPTQTHVAIRKDKEDAAYETIRKIPNPNPNPKKAAVCPYRILCKQCNEHVGTISIVEENSLICFKIENVHFRRGYEQIKGKKLKYIKEELIQNGLEVVNVSQLNEFAEIVNNKRKSSQPLVYCDTHLSEDDILSLTKDCPREYQKELFLQALQRNTLVYLPTGSGKTLIAAMVLNCMKKLNPDKLMVFLVDRIPLVYQQSDYIKYQVPDLRVEILAGDIGRFPGDKAHWTVTVQALLENKIDLLVMTGQILLNLMAKECPVLSMSDISLIVFDEAHHCLGDHIYNHIMRDFYMKTNDKFKPLVLALTASPAGTDKLETTREKLKTLLSNLCAYARMPLRSRDLELHCNRPETSYKVTPLNSKQTQLQLDIERYLNSITSLIEEEAKRPKALEDLNVLSQCYRGALRDLIKSSHGDKSRIKSLAIAEHAMQILSVNEVSNVLGHEYAVECFEECIKQLQTAASPMEKLKKMLVGSLESLKLLECSISELSRVSNLFSTSDRYKYLVDELKKFTRQVEQDQTSRGIIFVKMRKTAYKLCERLRRETEFCQRLNPAFLVGHGQGSDGMDWKGEQEEILKKFRSGDVKLLVSTSVLEEGLDVPACNQIIRFDSSLTLRAIVQGRGRAARRPNSQFVIICSDKNEETHAREAVRKEANMEKAMQELNVNTCDPLQALSFGCRSEKPDFSRDQVQESTAESMEFQTTAEEHDMGNDFSEETLTVNERGESLASGGPTKRRKNYVPRVAITVDNVVFGDESKQLGLLTNYFEDYFDVKSIRKGESVEMTKTTDETSDRKRTSRCVRLELEPSKQGQFNNKDKFFGYVAQSWCSRPTELLTQTKQLWLRRDDISQKPKDYKPVMVIKPDMMSLGYFRSESQYCQHWPIKNSKLENIRIAFQHDLKTVLICFTVPNPRSQFKADLYKLQIHYNELQEYILVNRPRSSETDLYLSLRHPPRMFKAKSFVKKDQDVDDDNNDFEDWYYRENDYDSGFDHENIDEFTSESEDSEMLDDDDYSTAEHSKKGETPDNESLLTSTDIASFDDVVNWERVIEIEDSRDSFGSCCTYDFTFKPDEWNDMKDVLATIAKYDKKVFYASVTNSITSLPEISIPNELPFDVKYATQCVLHSYPFIRGRITSKFNHLLSSRPEPVVKLALARLGSAIERNSFCDPEAKFERLLEETNVAGASGISKQLLPSECAMIKRMVVTPTRLLFFPPEVMSKNRVLRHFDTDQFLCANVRDEDFSRLSSAAGVIDNILERLQTTLDNGVMAGGQRFLYLGSSNSQLRNHGFWFVRPRPYPQEIREWMGDFSSIRCVGTFMARIGQCFSTSMDAVGIDVNEGTSWDMDEDIKTSDGSYCFSDGVGRISHSLAQQVAKTIALDFTPSAIQIRFAGFKGVLALDPTLSGKTAVFRPSMRKFESPHRRLEVLQTSRPQPVFLNHQLIILLSSLGIPDEVFINLQRRMLDRLAGMLVDEKLATLQLVSGAKTGIGYKRLSEAGLLLTNEPFFKSLLVALYKERMQNLFKRARILLPTSEARLMIGVMDETGILKPGQVFVQYSLVSNEADRFMEFSKSSSQILTGPVVVTRNPCLHPGDVRQLTAVSVPQLAHFVDCIVFPNHGPRPHPSEMAGGDLDGDMYFVSWMKNLLPKKPLFPPMNYIAPPKKEVKEPITVSHMTMFVAEYIRYDQLGVIDNAHKAQADSQEGGVKSPLCLDLAERHSRAVDAPKTGDWPEMPKEAKVTVFPDFMMKPDKPSYASDKVLGKLHRECRAFKDNIARDIPQKKPHVDPDLLIPGFQQYQEEARATYEEYSNQLQALMNLYCIETEGELISGCFSKFHSRIGREKFEIAQIISRFLRKMRENFREKFFEEFDDMVDDDNDITLEMQKKASAWYYVAYGFRNVSNAAENTPEDSTQTHFLSFPWLVDDVMLRITLGRVFKIEESGGLVSSISESVFDEFEKERDTLLCDFKDRIHKKNFIRKAMPGVKALAMFGSSATFLFRKHSDLDLCILSSSDIENHEELEQKEQIAELKRFLPTMRKLFKRVRMVESATVPVIIGNNPAKRGGVIANVKADLTASCHGLLKSIVLSNYIKSYPVLLPILRLLVHWGDVTGIAGHGVEAGIKSTMLVFLMLIFCVSKGLIENFDLMQVWKQCFQISTGQIKDLDFLQQWEGVIASLQSKVTKLKGNENTPITLRDQQIGEILLTFFQEYNAILDMEIPHTFASLLGVSKLAELLDPDHLRQLKEHMQRAFHLLALYRDAEVLLTVSASEIDRVIFLSETLSYAMAGSERYNASQLSKKTGARVTIRPSLPGSAFGLVLQAIGTEFAVAAVERTLSTMATQALRNKAVIMSVCFVKEAKQMLFEGCLSDDDRVSFVPYYGNHHSTHDSLALYVPLLSNQRTDLQRIGEDYTRHEFICFQEKFLTQAQVIERDFVQSIYGKMEFAIHFGRIYVLNIPKTFTEDSEPPSVGIFQTNLTRGYKPRPSVLSVPSNIRKFGKTRRRQNKGKSQHWNKKGKVFEIGEDGKKIPKEKASRSSFFTLVSSQEKAVDFLTQRGFSEAQSSSSEFYSVEIHTDHEFCVVTDKDFNFQKIKLPKLRWCAVDIKRAWKENPEKKDDTELDGVETDVRFILQSSRELSATDIRETDYEQYRDTLQPLKPHRQPQTISCPFQIKQDIWKNVSLIRHKKSRMYTLDESVDFESDFKRSLCVNVNEITEYSRPKRNASEFNQVFTRYEVLVKAGLPCSWSNTESVEKLLREIWCFGFDFASHLSE

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q8LHH9	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000952 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF01909 all species →	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR002934 all species →	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.