Gene detail

Detailed information of amic_s0116.g36.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:347946...360425
NR annotation: XP_015753746.1, PREDICTED: uncharacterized protein LOC107333443 isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g36.t1

ATGTTTGCAAGTACCAGATGTGAGATTGCTCTCCGTTGTGGAAAGTGTCGCACAAAGCTGGCTGATGGGGAAATCCTTATGCTCGCAACAACTCTGGCAACTGAGCCACCCTCACATCTAGCGGTTAAAGAGGGAAAAGAGGAAGATGCATACACGGCGCTCGACAAGGTCGAAAATGCAGGCGCTGGAAAAAGCTCTCAAAATCGCTGCCCTTACACGCTGCATTGTCGTTTTTGTTCCATGGTCGTTGGCAAAGTAACAAGACTGGCGTCAAGAGAGTTTATCTGTTACAAATTCGAGAACGTCTTCATTATGTACAATAGCGAGAAGATAGAAGCAAAAAAGGTGTCGAAGGTTCGTGAAAGACTTCAACAGTGTGGCATAAAAGTTGTGAATGTCTCAAACACTGTGACCAGCCATCAGCTAACGTTCCAATCTTCTTCTCCACAAGCTTCTTTACCCATGGTTTACTGTGATACCAGGGAGCTTTCTCACACCTCGCGAGAAATAGATGTCTTAACACGAGAGAACCCTCGGGATTACCAAAGAGAGCTTTTTCTTTCTACAATGTGCAGAAACACGCTTGTGTACCTCCCAACGGGTTCTGGTAAGACCTTGATTGCGGCGATGGTTCTGAGTTGTATGAGAGAACTTAATCCAGGTAAACTGATGGTGTTTCTCGTTGATCGAATCCCGTTGGTCTTCCAACAGAGTAACTACATTAAGAAACAGCTACCAGGTTTAAAAGTAGGATCGTTAGCTGGTGAAATGGAGCCCGAACAGCTACAGAGTGTGCACAAGAAACTTGCTGAAAGGACAATTGATGTTTTAGTTTTGACTCATCAGATTTTTCTGAATGCCTTAGCCACCCAAACTAACCAAATCATCCGAATGTCGGATATTTCAGTTCTGGTTTTCGATGAAGCTCACCATTGCCAAGGGAACCATCCATATAACAAGATCATGAGCCAATTCTACCGCAACAATCCAAAGAGCCTAAAACCTCTCGTGCTGGGTTTGTCTGCATCTCCAGCTGGAGAGCTGTCAATGGAACGAACCTTTTCAAAGCTTGAAGAATTGCTGAAGAACTTGGAATGCAATATTTCGACACCGGTGTTGTCTGAAGATCTCATTGCGCATGTCAATTATCCCGAGACTTCTTACGAGGTGGCATGTGCTTCGAATGATTACCTTAAGCTGGTCATACAAAAGCATATTGAACACTTAAAAACTAAATTCATCGACAATGCGCAGGGATCCCATTGCTTTGAGCTCCAAGGGATGCCTGTGTTTTCGCCCAATTTTAGAGGTGCACTTAGAAGATTGATTGACGACTGCCATGGTAACAAGAAGCGCATCAAACCACTGATAGTTGGAGAGCATATAATGCAAATGCTGGGTGTTGTTGATCTGAGTGAGGTTCTTGGCTGTAAACATGCCGTAGAATGCCTACAAGAATGCGTCAAACGCATATCGTCTCCAACTACACCAAAAGACGGCGCGTTGAAACGTATTGTTGACGCTGATCCCACATTCCATTGTGTTATAATTGCATCAAGTACTCTGATTCATGGGAGTTCCATGTCAGAAAGGTACAACATTCTTCAAGGACATGTAAGAGAGTTCGTCTGCCGTTCTCTGAGCGATGAAACATGCCGAGGAATTATTTTTGTGAGCATGCGCAAGACGGCTTATAAGTTGTGCGAACAGATTAGATCTATACCAATGGTGAGTGAAGCTTTGAACCCTGAGGCATTTGTTGGTCATGGCCAGGGAAGCTATGACGGAATGACATGGAGAGACGATCAGGAGTCTTTGTTAACGAGATTTAAATCTGGCACAACAAAGCTTCTGATCAGTACCAATGTTCTCGAAGAAGGCCTTGACGTCCCTATTTGTAACCTGGTCGTGCGCTTTGAGGGCGCGGCTACCTTGCGGGCTCTTGTCCAGACCCGTGGACGAGCTTCTCGTCGACACGACAGTAAGTTTGTCGTAATCTGCGATGAGAACGAAAAACAGGGAGCCCTAGATGTAATCAACAAGGAGAGAAACATGAAAACAGCCATACAACATTTGGTAGAGAATCACAGGTTGAAATCTCAAGCAGAAGATTTTGGCTGTGAATTGAGAAAGCCAAGTTTTCTTTCTCCGTTTTCACAAGAATCCAATGAAGAAAATCACGCACAAAGCTACAAACCCTTGGTTTCTGTCTCTGTCCAAAACTTCGAGTGGGTCACATACCGTGTAATAAGTTTCCTGCAAAGTAACTTCGATGTTACGTCTATGAAACCAACTCAGTCGGCTTCAGTAGCAGGAACGGAACAAAAGCGAATGACTTTCGAACTACAACCAAGCGAGGATGTGAAAAACAAAGAGTTCAAATCCAAAGAGCAGTTCCTTTGTCACGTGGTTGAAATGTGGTGCTCAGAACTAACCAATCCAGACGAAGAACCAGTTCCAGTATGGCTCCAGGCCTCTCTCCCAAGAAAACGTCAAGGGAAAAAGGAGTGTGATCATCAGCTACCTGCAATTTCTTTGTTTCTCGGAACCCTTGTAACTCGATGTTATTTTCTACGCGAATGGCCTCCAGACGTAAGATCAATTAAACAAGTTCAAATTCACTTCGACCACAGCTTCAAGATACTGAGAGTGTCATTCCAATCACTTCCATTTCTTTACAAGCTCGAGCTGAGATACGACGAGCTCGAAGAATTCATCATTGTGGATAATGATGTCAGCTCAGGTGCAAAGAGAATTTTTCTTACCGCAAAGCACCCTCCTCGCATTTTCCGAGAAGATGGGGAACCCCATGAGCTCCCACTCGACGACAACCTGCTGCAAAGTGACGACGAAGATTCCTTGCTCGAATCTTCAGATTCAGAAAGTACAGACAGCTTCTCCACCGATGAAGAATACCCGGATGAAGTCAGGAATGTTCGCGATCGCGTCCAGTCAAGTGCTTCCTCTTCCGAAATAACCTGGGATAGAGTTTCTCACTTAGGTGGCGGCGAGGAAGCTTGGGGTCAGTGTTTGACTTATTGTTTTGCACTGTCGCCAGGCGACTCTTATAATTTCATGAGTCTGATAAATGTGATTCAAAACAGATTTCATAAGAAAGTGTTTTTCTGTCGAGTGAAGGAAACCAGTGAAATGATTCCATTTGTTGATTCCACCACTAACTTGCCTTCAGATGTCAAATACGCTGCACAAAGTGTCATCTCGATGTATCCGGCCATGCGCAGGCGCCTTTCTGGCAATTTTGGAATCCTTCTTCAAAGAAACCCACCCGATGTGATCTCCGCTCTAATCCAGTTGAGGAAATCGTTAGAACAAGACAGGTTCTGTGAGCCTGAGAAGACACTCAATTCGTTACTGGCGCAAGGAAATCCATCCACATCCGGAACCCTGGCAAGGCTTGTGCCAAGTCATTGTGCTCTAATTAAACGCGCGGTCATCACCCCAACAAGGCTCCTCCTTTTTCCACCGGAAGTAATGGTAAAAAACCGCGTTCTCAGGCAGTACGACACAGAAAAGTTTCTGTGCGTTAGCATTCGCGATGAAGACCTTTCAAAATTATCAGCCGCAGGAGGTAGCCTGGATCTACTGCTTAATGACATCAATCTTCGATTAAATAAAGGCTTGACAGTAGCTGGTCAACATTTTCACTTCCTGGGATCCTCAAATAGCCAGCTTCGTAGCCATAGTTGCTGGTTTGTGGAAGCAGAGTTGCAACCAGATTACATAAGAAAGTGGATGGGAGACTTAGCGCAAATCAGGTGCGTCGCTTCATACATGGCTCGCATGGGACAATGCTTCTCTACTTCGATAGATGCCGTTGGAATCGAAATAAGCCAAGGTGTTCTACATGAAGTGGAAGATGATATCAAAACCTCTGACAAGGAGTACACGTTTTCCGATGGAGTTGGCAGAATATCGAAACAGCTGCTGAAAGAGGTTGTAACAAAAATCGCAAAACCATTCGAGCCATCTGCACTGCAAATCCGATTCGCTGGCTTCAAAGGCGTCCTTGCGCTGGATCCCACAATTCCTGGCAAGCAAGCCATCTTTCGCAAAAGCATGTGCAAGTTTGAAAGCTCACATCGCAGGCTTGAAATACTGGCGACGTCTCGTCCCCAGGTCGTTTACCTCAATCACCAGGTTGTCATGTTGCTTTCCAATCAAGGTGTCCCGGATGAGGTGTTCATCAGTTTACAAAAAGACATGTTGGATAAGCTAGCAGGAATGCTGGTGAACGAAAAAGATGCCATTGAACTGCTGGCAACTGGGGCCAAAGTGGGCGTATCGTATCACAGCATATCTAGTGCCGGGATACCGCTGACAACTGAACCGTTTTTTAAATCCTTATTGGTCGCCATGCATAGAAACCGCATCTTCGAGCTTCTCTCTCGAGCCCGCATTCTTCTGCCACCAGAGAAGGCGCGTTTGATGATGGGTATCATGGACGAAACTGGTGTGCTAAAACCAGGACAGGTCTTCGTTCAGTACTCTGCCGTTTCAACTCGTTCAGATCGAGAGGACCAATTTGACAAGAACCAAAGAACAGTCTTAAAGGGACCAGTGGTGGTGACGAGAAATCCTTGTTTACATCCGGGTGATGTTCGTCAGCTCGAGGCGGTACATGCGTCACAGCTCACTCATCTTGTGGATTGCATTGTGTTTCCACGTGTAGGACTCCGACCCCTCCCCAATGAAATGGCAGGTGGTGACTTGGATGGAGATCTTTATTTTGTCTGCTGGGACAAGCGCCTGCTACCAAGGGAGCCGAATTTCCCGCCGATGGACTATCCCACCCTTCCCAAGCTTGAAAAAGATGAGCCAATTACACCGGCCGACATGACAAAGTTCGTGGTAGATTACATCCGGTCTGACCAGTTAGGAGTGATCGACAATGCACACAAGGCTTTGGCAGACGTGGAAAAAGGTGGAGTTAAATCTAAGATGTGTCTTCACCTTTCAGAGCTGCATTCCTTAGCTGTTGACGCACCTAAGACAGGAAAATGGCCAACCTTACCAAAAACGGGCATTAAACAGTATCCTGATTTCATGATGAAGAATGATAAACCTACTTATCCATCAGAGAAGATTTTGGGAAAGCTTTACCGACGCTGCAGAAAGTTTCAGGACACTGCGTCTGAGAAGCAGAGTCTTAAACTCCGCGTGGACCAGTCATTCCTGCTGCAAGGACACGACAGATTTCTAAACGAGGCCAGAAAAACTTTCCAAGAATACCAAGATGAGATGCTAGGATTGATGCGTTTGTACGGCATCGAAACCGAAGCAGAGGTCTTCACTGGTTGCTTTTTGAAACTTCGAAATCGTTTACAGAAGGAAAAATCGGAGATCGCAGATATCGTGAGCAAGTTGGTGTTTCATATTCGGTCTCACTTTCGACGCCAGTTCTTCAGTGAGTTCGATGTAGATGGTCAGGAGTTACTGGAAGATTCGCTCATTACCTATGAAATGCTCCTCAAAGGTTCAGCATGGTATATTGCGGCTTACAAGCAATCGGAAAATACAGACGAGTCAGAGGCAACCAATCGGAAGAGATTGTTTGGTTTACCATGGTTTGTAAATGACGTCATGTTGGCTATTAAAAAACACCGAAAACAACGTAGCTTGTGCCAGACTTTGGACGTGAGAACAGCAGTGGGAGAAAGTCTCATCAGAATCTTCAAAGAAGAGAGGGCCTGGTTACTAGAAGACTTCAAAACGAGACTACGAACAAAAGAAGTAGTCTGTCGTCATCTGAAGCAGGTTCAACCTAACCAATCAATGACTATGATTGGATCCTCAGCTACGCTTCTCTTTCACCGCGAGTCAGATTTGGATCTGTGCCTTCTGTCAAAAGACTGCCAACCCGGGAGCTTCCTTCGTCGTTCTGGAAAGCACTTTGGAGATACAAGGGTTGCTCGACAGGACCAAGAAAATTCTCTCAAAAATCTTGTTCCATGTCTTGAGGAAAAAATAAAAAGTGAGGAAAAGCAGCAAGAACCGAAAAATCTCTTCTTCAAAGCTCGTTTGGCTAAAAAGAAGAAATTTCCGGTCCTTGTATGCAAAAAGCCCACCGAGAAATTGAAAAGTACGAGCAAATGTCGTCCCAGTCTTGTTTGCGACTTGAGTTGTACCCCAGACGGTCTAAAAGAAACCATTTTGCTGTCGAGCGTCTTGAAGACTTATCCAGCTCTACTGTTAATCATGCGAATCATTCATCGCTGGTGTTGTGTGACAGGATTGTCACGAAACAAGGCGGGTGCTGGCAACGTTTCAAACATGTTGAACTTCCTGTTTTTGACTCAGTGCGTGCAGAAGGATAAAATTGAAAACTTCAGCGTTGATAGTGTCTCGCAACAGGAGCAAGACCTTTTACAAGGAAAAAAATCAGATGGCCAGTTGTATATGGATTGGGAAACAGTGATCAACTTTCTTGAAGCAACACAAGAAAACCCAAGTAAAATAAACCCCGCCGGGCTGGGGGAAATGATATTAGAGTTCTTTCAGACACAAGAACTCTCTTTTGAAAAACAGCTGCCAGATTTCTTAAGAAGCATAGTACATGAGTGTAACTTTGCAGCGTGTTTAGAAAATGAACACCTGGAACTGGTGAGAGAGCAGATGCACCGCGCGTATCAATTGCTGGCACTGCACGGAGATGCGCAGATCATGCTCGATGTAAGCGGTTCCGAAGATTACAAGGTGATTTTTTTGACCCCTCTTCTTTCAAATTTCGTAGCTGGAGTCGAAAAGAGCAAAGCTCTGGAAATAGAAAGGAAGACTGGAGTGAAGAGGGCCATTATTAGACACAGATTCCGACAGTCTCGTAATTCTGCCTTTTTAGAAGTGAATGGAAGCGAGCCGGCAATTCGCGCAGTAGAGAAGGAGTTGGAAAAAATGTCTAAACAGGCATCACGAGACCGCATGTCTCTGATGAGCAGCTGCTTCGTGGAGGGTGCAAGTGTGCTGTTGTTTGAAGACAGTGGGATTGAAAACGATGTTTTGGATCTAACACCATACGATGGACCTTGTCACCAGGCCCATGACAAGCTAGCGCGGCATGTTGCCTTTGTAAAAGACCCAAAAGACAACGGGTATCCACTTCGATGCTTCACTGAGAAGTTCTTCCAGCAACTTCAGATCCTTGAAAGAGATTACGATCAGCAGATTCATGGATATTTGGAATTTGCTGTTCATTTTGGACGCGTCTACCTGTTCAGTGTACCCCACGTGCTGCTGGAAGAGGGTGGCTCCGTTACTATAGCAATGCTTCGGACAAACAAGCGTAAGGTGAACAGGTCAGAGAGCAGAGCGGTGCCCAAAGGTGTAAGATACGCTGACGACGAGGCAAGTGTTGGTCGCCGGAGAAGGCGGAAATCGAGACAAACAGTCGAAAACGAAGAAAAGAAAAAAAAGGGGAAACGAGGAAATCCATCCAGAAGTTCTTTGTTCACGGAGGTGCGATCACCACAGAAAGCAAAGAAATTCCTCCTCTTCTTTGGGTTTAATCCCGAAGAAAAAATCGAGAAACATGTCGTCACTATTTACTCAAGCGATGATGACGTCGAATTTTACGTTCAGTTCGACAAGAAACTTAAATTCATTGAATTTAGCTTTCCTAAGTTACGTTGGTGCATGGTTGATGTCAAGAGACGATGGCAACAGCCCCAGGACCCCGACGATGACAAAAGTCGTGACATCATACTGGATGGCGGGGAGTCGGATGTGCGCTTCCTACTGCAGTCCCGTTATATTTTGCAACCACAAGACACTCCGCAAGCGAAATACGAACGCTACCAGCGTGTGCTTCAAGTCCGTAACCAATGTGACAGCAGCGATCTGCCATTTTCAATCCAGGAAGACTTGTGGAAAGATGTGAAGCTTATTCGCAGTGTTAAGTCCACAAAGTTCACACAAAAGCAAGAAAATAGAGGTCTTTCGACAGACCTAACGGTCTCTTTGGATGAAGTGTATGAATATTCCAGGCCAACTGAGAGTGTTAACAAGTTCGGGAAAGTCAAATCCCGGTGGGAGGTGTCCTTGAAAGCTGTGCTTCCCAAAGATTTAACGGACAAGGACATGGTGCAGAAATTTCTGCAAGACGTTTGGGAATTTTCTTTCCAGTTATCTTCTTTTGTGTCTAAGTAG

Transcript

amic_s0116.g36.t1

GTAGGAGGCTTCTTTTAACACTAAAACGGTGCAAATCCAAGTTTTATGATCATTCCAAGAAGAAAAGAATACCTTTCATTATTTTAAATGAGACCCCAAGAAAGACGGACTGGTTGCCACTGAGAAGCAATGTTTGCAAGTACCAGATGTGAGATTGCTCTCCGTTGTGGAAAGTGTCGCACAAAGCTGGCTGATGGGGAAATCCTTATGCTCGCAACAACTCTGGCAACTGAGCCACCCTCACATCTAGCGGTTAAAGAGGGAAAAGAGGAAGATGCATACACGGCGCTCGACAAGGTCGAAAATGCAGGCGCTGGAAAAAGCTCTCAAAATCGCTGCCCTTACACGCTGCATTGTCGTTTTTGTTCCATGGTCGTTGGCAAAGTAACAAGACTGGCGTCAAGAGAGTTTATCTGTTACAAATTCGAGAACGTCTTCATTATGTACAATAGCGAGAAGATAGAAGCAAAAAAGGTGTCGAAGGTTCGTGAAAGACTTCAACAGTGTGGCATAAAAGTTGTGAATGTCTCAAACACTGTGACCAGCCATCAGCTAACGTTCCAATCTTCTTCTCCACAAGCTTCTTTACCCATGGTTTACTGTGATACCAGGGAGCTTTCTCACACCTCGCGAGAAATAGATGTCTTAACACGAGAGAACCCTCGGGATTACCAAAGAGAGCTTTTTCTTTCTACAATGTGCAGAAACACGCTTGTGTACCTCCCAACGGGTTCTGGTAAGACCTTGATTGCGGCGATGGTTCTGAGTTGTATGAGAGAACTTAATCCAGGTAAACTGATGGTGTTTCTCGTTGATCGAATCCCGTTGGTCTTCCAACAGAGTAACTACATTAAGAAACAGCTACCAGGTTTAAAAGTAGGATCGTTAGCTGGTGAAATGGAGCCCGAACAGCTACAGAGTGTGCACAAGAAACTTGCTGAAAGGACAATTGATGTTTTAGTTTTGACTCATCAGATTTTTCTGAATGCCTTAGCCACCCAAACTAACCAAATCATCCGAATGTCGGATATTTCAGTTCTGGTTTTCGATGAAGCTCACCATTGCCAAGGGAACCATCCATATAACAAGATCATGAGCCAATTCTACCGCAACAATCCAAAGAGCCTAAAACCTCTCGTGCTGGGTTTGTCTGCATCTCCAGCTGGAGAGCTGTCAATGGAACGAACCTTTTCAAAGCTTGAAGAATTGCTGAAGAACTTGGAATGCAATATTTCGACACCGGTGTTGTCTGAAGATCTCATTGCGCATGTCAATTATCCCGAGACTTCTTACGAGGTGGCATGTGCTTCGAATGATTACCTTAAGCTGGTCATACAAAAGCATATTGAACACTTAAAAACTAAATTCATCGACAATGCGCAGGGATCCCATTGCTTTGAGCTCCAAGGGATGCCTGTGTTTTCGCCCAATTTTAGAGGTGCACTTAGAAGATTGATTGACGACTGCCATGGTAACAAGAAGCGCATCAAACCACTGATAGTTGGAGAGCATATAATGCAAATGCTGGGTGTTGTTGATCTGAGTGAGGTTCTTGGCTGTAAACATGCCGTAGAATGCCTACAAGAATGCGTCAAACGCATATCGTCTCCAACTACACCAAAAGACGGCGCGTTGAAACGTATTGTTGACGCTGATCCCACATTCCATTGTGTTATAATTGCATCAAGTACTCTGATTCATGGGAGTTCCATGTCAGAAAGGTACAACATTCTTCAAGGACATGTAAGAGAGTTCGTCTGCCGTTCTCTGAGCGATGAAACATGCCGAGGAATTATTTTTGTGAGCATGCGCAAGACGGCTTATAAGTTGTGCGAACAGATTAGATCTATACCAATGGTGAGTGAAGCTTTGAACCCTGAGGCATTTGTTGGTCATGGCCAGGGAAGCTATGACGGAATGACATGGAGAGACGATCAGGAGTCTTTGTTAACGAGATTTAAATCTGGCACAACAAAGCTTCTGATCAGTACCAATGTTCTCGAAGAAGGCCTTGACGTCCCTATTTGTAACCTGGTCGTGCGCTTTGAGGGCGCGGCTACCTTGCGGGCTCTTGTCCAGACCCGTGGACGAGCTTCTCGTCGACACGACAGTAAGTTTGTCGTAATCTGCGATGAGAACGAAAAACAGGGAGCCCTAGATGTAATCAACAAGGAGAGAAACATGAAAACAGCCATACAACATTTGGTAGAGAATCACAGGTTGAAATCTCAAGCAGAAGATTTTGGCTGTGAATTGAGAAAGCCAAGTTTTCTTTCTCCGTTTTCACAAGAATCCAATGAAGAAAATCACGCACAAAGCTACAAACCCTTGGTTTCTGTCTCTGTCCAAAACTTCGAGTGGGTCACATACCGTGTAATAAGTTTCCTGCAAAGTAACTTCGATGTTACGTCTATGAAACCAACTCAGTCGGCTTCAGTAGCAGGAACGGAACAAAAGCGAATGACTTTCGAACTACAACCAAGCGAGGATGTGAAAAACAAAGAGTTCAAATCCAAAGAGCAGTTCCTTTGTCACGTGGTTGAAATGTGGTGCTCAGAACTAACCAATCCAGACGAAGAACCAGTTCCAGTATGGCTCCAGGCCTCTCTCCCAAGAAAACGTCAAGGGAAAAAGGAGTGTGATCATCAGCTACCTGCAATTTCTTTGTTTCTCGGAACCCTTGTAACTCGATGTTATTTTCTACGCGAATGGCCTCCAGACGTAAGATCAATTAAACAAGTTCAAATTCACTTCGACCACAGCTTCAAGATACTGAGAGTGTCATTCCAATCACTTCCATTTCTTTACAAGCTCGAGCTGAGATACGACGAGCTCGAAGAATTCATCATTGTGGATAATGATGTCAGCTCAGGTGCAAAGAGAATTTTTCTTACCGCAAAGCACCCTCCTCGCATTTTCCGAGAAGATGGGGAACCCCATGAGCTCCCACTCGACGACAACCTGCTGCAAAGTGACGACGAAGATTCCTTGCTCGAATCTTCAGATTCAGAAAGTACAGACAGCTTCTCCACCGATGAAGAATACCCGGATGAAGTCAGGAATGTTCGCGATCGCGTCCAGTCAAGTGCTTCCTCTTCCGAAATAACCTGGGATAGAGTTTCTCACTTAGGTGGCGGCGAGGAAGCTTGGGGTCAGTGTTTGACTTATTGTTTTGCACTGTCGCCAGGCGACTCTTATAATTTCATGAGTCTGATAAATGTGATTCAAAACAGATTTCATAAGAAAGTGTTTTTCTGTCGAGTGAAGGAAACCAGTGAAATGATTCCATTTGTTGATTCCACCACTAACTTGCCTTCAGATGTCAAATACGCTGCACAAAGTGTCATCTCGATGTATCCGGCCATGCGCAGGCGCCTTTCTGGCAATTTTGGAATCCTTCTTCAAAGAAACCCACCCGATGTGATCTCCGCTCTAATCCAGTTGAGGAAATCGTTAGAACAAGACAGGTTCTGTGAGCCTGAGAAGACACTCAATTCGTTACTGGCGCAAGGAAATCCATCCACATCCGGAACCCTGGCAAGGCTTGTGCCAAGTCATTGTGCTCTAATTAAACGCGCGGTCATCACCCCAACAAGGCTCCTCCTTTTTCCACCGGAAGTAATGGTAAAAAACCGCGTTCTCAGGCAGTACGACACAGAAAAGTTTCTGTGCGTTAGCATTCGCGATGAAGACCTTTCAAAATTATCAGCCGCAGGAGGTAGCCTGGATCTACTGCTTAATGACATCAATCTTCGATTAAATAAAGGCTTGACAGTAGCTGGTCAACATTTTCACTTCCTGGGATCCTCAAATAGCCAGCTTCGTAGCCATAGTTGCTGGTTTGTGGAAGCAGAGTTGCAACCAGATTACATAAGAAAGTGGATGGGAGACTTAGCGCAAATCAGGTGCGTCGCTTCATACATGGCTCGCATGGGACAATGCTTCTCTACTTCGATAGATGCCGTTGGAATCGAAATAAGCCAAGGTGTTCTACATGAAGTGGAAGATGATATCAAAACCTCTGACAAGGAGTACACGTTTTCCGATGGAGTTGGCAGAATATCGAAACAGCTGCTGAAAGAGGTTGTAACAAAAATCGCAAAACCATTCGAGCCATCTGCACTGCAAATCCGATTCGCTGGCTTCAAAGGCGTCCTTGCGCTGGATCCCACAATTCCTGGCAAGCAAGCCATCTTTCGCAAAAGCATGTGCAAGTTTGAAAGCTCACATCGCAGGCTTGAAATACTGGCGACGTCTCGTCCCCAGGTCGTTTACCTCAATCACCAGGTTGTCATGTTGCTTTCCAATCAAGGTGTCCCGGATGAGGTGTTCATCAGTTTACAAAAAGACATGTTGGATAAGCTAGCAGGAATGCTGGTGAACGAAAAAGATGCCATTGAACTGCTGGCAACTGGGGCCAAAGTGGGCGTATCGTATCACAGCATATCTAGTGCCGGGATACCGCTGACAACTGAACCGTTTTTTAAATCCTTATTGGTCGCCATGCATAGAAACCGCATCTTCGAGCTTCTCTCTCGAGCCCGCATTCTTCTGCCACCAGAGAAGGCGCGTTTGATGATGGGTATCATGGACGAAACTGGTGTGCTAAAACCAGGACAGGTCTTCGTTCAGTACTCTGCCGTTTCAACTCGTTCAGATCGAGAGGACCAATTTGACAAGAACCAAAGAACAGTCTTAAAGGGACCAGTGGTGGTGACGAGAAATCCTTGTTTACATCCGGGTGATGTTCGTCAGCTCGAGGCGGTACATGCGTCACAGCTCACTCATCTTGTGGATTGCATTGTGTTTCCACGTGTAGGACTCCGACCCCTCCCCAATGAAATGGCAGGTGGTGACTTGGATGGAGATCTTTATTTTGTCTGCTGGGACAAGCGCCTGCTACCAAGGGAGCCGAATTTCCCGCCGATGGACTATCCCACCCTTCCCAAGCTTGAAAAAGATGAGCCAATTACACCGGCCGACATGACAAAGTTCGTGGTAGATTACATCCGGTCTGACCAGTTAGGAGTGATCGACAATGCACACAAGGCTTTGGCAGACGTGGAAAAAGGTGGAGTTAAATCTAAGATGTGTCTTCACCTTTCAGAGCTGCATTCCTTAGCTGTTGACGCACCTAAGACAGGAAAATGGCCAACCTTACCAAAAACGGGCATTAAACAGTATCCTGATTTCATGATGAAGAATGATAAACCTACTTATCCATCAGAGAAGATTTTGGGAAAGCTTTACCGACGCTGCAGAAAGTTTCAGGACACTGCGTCTGAGAAGCAGAGTCTTAAACTCCGCGTGGACCAGTCATTCCTGCTGCAAGGACACGACAGATTTCTAAACGAGGCCAGAAAAACTTTCCAAGAATACCAAGATGAGATGCTAGGATTGATGCGTTTGTACGGCATCGAAACCGAAGCAGAGGTCTTCACTGGTTGCTTTTTGAAACTTCGAAATCGTTTACAGAAGGAAAAATCGGAGATCGCAGATATCGTGAGCAAGTTGGTGTTTCATATTCGGTCTCACTTTCGACGCCAGTTCTTCAGTGAGTTCGATGTAGATGGTCAGGAGTTACTGGAAGATTCGCTCATTACCTATGAAATGCTCCTCAAAGGTTCAGCATGGTATATTGCGGCTTACAAGCAATCGGAAAATACAGACGAGTCAGAGGCAACCAATCGGAAGAGATTGTTTGGTTTACCATGGTTTGTAAATGACGTCATGTTGGCTATTAAAAAACACCGAAAACAACGTAGCTTGTGCCAGACTTTGGACGTGAGAACAGCAGTGGGAGAAAGTCTCATCAGAATCTTCAAAGAAGAGAGGGCCTGGTTACTAGAAGACTTCAAAACGAGACTACGAACAAAAGAAGTAGTCTGTCGTCATCTGAAGCAGGTTCAACCTAACCAATCAATGACTATGATTGGATCCTCAGCTACGCTTCTCTTTCACCGCGAGTCAGATTTGGATCTGTGCCTTCTGTCAAAAGACTGCCAACCCGGGAGCTTCCTTCGTCGTTCTGGAAAGCACTTTGGAGATACAAGGGTTGCTCGACAGGACCAAGAAAATTCTCTCAAAAATCTTGTTCCATGTCTTGAGGAAAAAATAAAAAGTGAGGAAAAGCAGCAAGAACCGAAAAATCTCTTCTTCAAAGCTCGTTTGGCTAAAAAGAAGAAATTTCCGGTCCTTGTATGCAAAAAGCCCACCGAGAAATTGAAAAGTACGAGCAAATGTCGTCCCAGTCTTGTTTGCGACTTGAGTTGTACCCCAGACGGTCTAAAAGAAACCATTTTGCTGTCGAGCGTCTTGAAGACTTATCCAGCTCTACTGTTAATCATGCGAATCATTCATCGCTGGTGTTGTGTGACAGGATTGTCACGAAACAAGGCGGGTGCTGGCAACGTTTCAAACATGTTGAACTTCCTGTTTTTGACTCAGTGCGTGCAGAAGGATAAAATTGAAAACTTCAGCGTTGATAGTGTCTCGCAACAGGAGCAAGACCTTTTACAAGGAAAAAAATCAGATGGCCAGTTGTATATGGATTGGGAAACAGTGATCAACTTTCTTGAAGCAACACAAGAAAACCCAAGTAAAATAAACCCCGCCGGGCTGGGGGAAATGATATTAGAGTTCTTTCAGACACAAGAACTCTCTTTTGAAAAACAGCTGCCAGATTTCTTAAGAAGCATAGTACATGAGTGTAACTTTGCAGCGTGTTTAGAAAATGAACACCTGGAACTGGTGAGAGAGCAGATGCACCGCGCGTATCAATTGCTGGCACTGCACGGAGATGCGCAGATCATGCTCGATGTAAGCGGTTCCGAAGATTACAAGGTGATTTTTTTGACCCCTCTTCTTTCAAATTTCGTAGCTGGAGTCGAAAAGAGCAAAGCTCTGGAAATAGAAAGGAAGACTGGAGTGAAGAGGGCCATTATTAGACACAGATTCCGACAGTCTCGTAATTCTGCCTTTTTAGAAGTGAATGGAAGCGAGCCGGCAATTCGCGCAGTAGAGAAGGAGTTGGAAAAAATGTCTAAACAGGCATCACGAGACCGCATGTCTCTGATGAGCAGCTGCTTCGTGGAGGGTGCAAGTGTGCTGTTGTTTGAAGACAGTGGGATTGAAAACGATGTTTTGGATCTAACACCATACGATGGACCTTGTCACCAGGCCCATGACAAGCTAGCGCGGCATGTTGCCTTTGTAAAAGACCCAAAAGACAACGGGTATCCACTTCGATGCTTCACTGAGAAGTTCTTCCAGCAACTTCAGATCCTTGAAAGAGATTACGATCAGCAGATTCATGGATATTTGGAATTTGCTGTTCATTTTGGACGCGTCTACCTGTTCAGTGTACCCCACGTGCTGCTGGAAGAGGGTGGCTCCGTTACTATAGCAATGCTTCGGACAAACAAGCGTAAGGTGAACAGGTCAGAGAGCAGAGCGGTGCCCAAAGGTGTAAGATACGCTGACGACGAGGCAAGTGTTGGTCGCCGGAGAAGGCGGAAATCGAGACAAACAGTCGAAAACGAAGAAAAGAAAAAAAAGGGGAAACGAGGAAATCCATCCAGAAGTTCTTTGTTCACGGAGGTGCGATCACCACAGAAAGCAAAGAAATTCCTCCTCTTCTTTGGGTTTAATCCCGAAGAAAAAATCGAGAAACATGTCGTCACTATTTACTCAAGCGATGATGACGTCGAATTTTACGTTCAGTTCGACAAGAAACTTAAATTCATTGAATTTAGCTTTCCTAAGTTACGTTGGTGCATGGTTGATGTCAAGAGACGATGGCAACAGCCCCAGGACCCCGACGATGACAAAAGTCGTGACATCATACTGGATGGCGGGGAGTCGGATGTGCGCTTCCTACTGCAGTCCCGTTATATTTTGCAACCACAAGACACTCCGCAAGCGAAATACGAACGCTACCAGCGTGTGCTTCAAGTCCGTAACCAATGTGACAGCAGCGATCTGCCATTTTCAATCCAGGAAGACTTGTGGAAAGATGTGAAGCTTATTCGCAGTGTTAAGTCCACAAAGTTCACACAAAAGCAAGAAAATAGAGGTCTTTCGACAGACCTAACGGTCTCTTTGGATGAAGTGTATGAATATTCCAGGCCAACTGAGAGTGTTAACAAGTTCGGGAAAGTCAAATCCCGGTGGGAGGTGTCCTTGAAAGCTGTGCTTCCCAAAGATTTAACGGACAAGGACATGGTGCAGAAATTTCTGCAAGACGTTTGGGAATTTTCTTTCCAGTTATCTTCTTTTGTGTCTAAGTAGGAGAGATAAATTCAGTTAAACTCAAGATCGATTTCTCTAAAATCAAGTAAATGGTGTTTGTTCTA

Protein

amic_s0116.g36.t1

MFASTRCEIALRCGKCRTKLADGEILMLATTLATEPPSHLAVKEGKEEDAYTALDKVENAGAGKSSQNRCPYTLHCRFCSMVVGKVTRLASREFICYKFENVFIMYNSEKIEAKKVSKVRERLQQCGIKVVNVSNTVTSHQLTFQSSSPQASLPMVYCDTRELSHTSREIDVLTRENPRDYQRELFLSTMCRNTLVYLPTGSGKTLIAAMVLSCMRELNPGKLMVFLVDRIPLVFQQSNYIKKQLPGLKVGSLAGEMEPEQLQSVHKKLAERTIDVLVLTHQIFLNALATQTNQIIRMSDISVLVFDEAHHCQGNHPYNKIMSQFYRNNPKSLKPLVLGLSASPAGELSMERTFSKLEELLKNLECNISTPVLSEDLIAHVNYPETSYEVACASNDYLKLVIQKHIEHLKTKFIDNAQGSHCFELQGMPVFSPNFRGALRRLIDDCHGNKKRIKPLIVGEHIMQMLGVVDLSEVLGCKHAVECLQECVKRISSPTTPKDGALKRIVDADPTFHCVIIASSTLIHGSSMSERYNILQGHVREFVCRSLSDETCRGIIFVSMRKTAYKLCEQIRSIPMVSEALNPEAFVGHGQGSYDGMTWRDDQESLLTRFKSGTTKLLISTNVLEEGLDVPICNLVVRFEGAATLRALVQTRGRASRRHDSKFVVICDENEKQGALDVINKERNMKTAIQHLVENHRLKSQAEDFGCELRKPSFLSPFSQESNEENHAQSYKPLVSVSVQNFEWVTYRVISFLQSNFDVTSMKPTQSASVAGTEQKRMTFELQPSEDVKNKEFKSKEQFLCHVVEMWCSELTNPDEEPVPVWLQASLPRKRQGKKECDHQLPAISLFLGTLVTRCYFLREWPPDVRSIKQVQIHFDHSFKILRVSFQSLPFLYKLELRYDELEEFIIVDNDVSSGAKRIFLTAKHPPRIFREDGEPHELPLDDNLLQSDDEDSLLESSDSESTDSFSTDEEYPDEVRNVRDRVQSSASSSEITWDRVSHLGGGEEAWGQCLTYCFALSPGDSYNFMSLINVIQNRFHKKVFFCRVKETSEMIPFVDSTTNLPSDVKYAAQSVISMYPAMRRRLSGNFGILLQRNPPDVISALIQLRKSLEQDRFCEPEKTLNSLLAQGNPSTSGTLARLVPSHCALIKRAVITPTRLLLFPPEVMVKNRVLRQYDTEKFLCVSIRDEDLSKLSAAGGSLDLLLNDINLRLNKGLTVAGQHFHFLGSSNSQLRSHSCWFVEAELQPDYIRKWMGDLAQIRCVASYMARMGQCFSTSIDAVGIEISQGVLHEVEDDIKTSDKEYTFSDGVGRISKQLLKEVVTKIAKPFEPSALQIRFAGFKGVLALDPTIPGKQAIFRKSMCKFESSHRRLEILATSRPQVVYLNHQVVMLLSNQGVPDEVFISLQKDMLDKLAGMLVNEKDAIELLATGAKVGVSYHSISSAGIPLTTEPFFKSLLVAMHRNRIFELLSRARILLPPEKARLMMGIMDETGVLKPGQVFVQYSAVSTRSDREDQFDKNQRTVLKGPVVVTRNPCLHPGDVRQLEAVHASQLTHLVDCIVFPRVGLRPLPNEMAGGDLDGDLYFVCWDKRLLPREPNFPPMDYPTLPKLEKDEPITPADMTKFVVDYIRSDQLGVIDNAHKALADVEKGGVKSKMCLHLSELHSLAVDAPKTGKWPTLPKTGIKQYPDFMMKNDKPTYPSEKILGKLYRRCRKFQDTASEKQSLKLRVDQSFLLQGHDRFLNEARKTFQEYQDEMLGLMRLYGIETEAEVFTGCFLKLRNRLQKEKSEIADIVSKLVFHIRSHFRRQFFSEFDVDGQELLEDSLITYEMLLKGSAWYIAAYKQSENTDESEATNRKRLFGLPWFVNDVMLAIKKHRKQRSLCQTLDVRTAVGESLIRIFKEERAWLLEDFKTRLRTKEVVCRHLKQVQPNQSMTMIGSSATLLFHRESDLDLCLLSKDCQPGSFLRRSGKHFGDTRVARQDQENSLKNLVPCLEEKIKSEEKQQEPKNLFFKARLAKKKKFPVLVCKKPTEKLKSTSKCRPSLVCDLSCTPDGLKETILLSSVLKTYPALLLIMRIIHRWCCVTGLSRNKAGAGNVSNMLNFLFLTQCVQKDKIENFSVDSVSQQEQDLLQGKKSDGQLYMDWETVINFLEATQENPSKINPAGLGEMILEFFQTQELSFEKQLPDFLRSIVHECNFAACLENEHLELVREQMHRAYQLLALHGDAQIMLDVSGSEDYKVIFLTPLLSNFVAGVEKSKALEIERKTGVKRAIIRHRFRQSRNSAFLEVNGSEPAIRAVEKELEKMSKQASRDRMSLMSSCFVEGASVLLFEDSGIENDVLDLTPYDGPCHQAHDKLARHVAFVKDPKDNGYPLRCFTEKFFQQLQILERDYDQQIHGYLEFAVHFGRVYLFSVPHVLLEEGGSVTIAMLRTNKRKVNRSESRAVPKGVRYADDEASVGRRRRRKSRQTVENEEKKKKGKRGNPSRSSLFTEVRSPQKAKKFLLFFGFNPEEKIEKHVVTIYSSDDDVEFYVQFDKKLKFIEFSFPKLRWCMVDVKRRWQQPQDPDDDKSRDIILDGGESDVRFLLQSRYILQPQDTPQAKYERYQRVLQVRNQCDSSDLPFSIQEDLWKDVKLIRSVKSTKFTQKQENRGLSTDLTVSLDEVYEYSRPTESVNKFGKVKSRWEVSLKAVLPKDLTDKDMVQKFLQDVWEFSFQLSSFVSK

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q8LHH9	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000952 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g36.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.