Detailed information of amic_s0116.g36.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:347946...360425
NR annotation: XP_015753746.1, PREDICTED: uncharacterized protein LOC107333443 isoform X1 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9LQV2RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q0DXS3Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q8LHH9Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF05183RdRPRNA dependent RNA polymeraseFamilyInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR007855FamilyRNA-dependent RNA polymerase, eukaryotic-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23079RNA-DEPENDENT RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003968Molecular FunctionRNA-dependent RNA polymerase activityInterproscan
GO:0030422Biological ProcesssiRNA processingInterproscan
GO:0031380Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan

TOP