Gene detail

Detailed information of amic_s0116.g4.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:69500...74415
NR annotation: XP_029201598.2, uncharacterized protein LOC114966039 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g4.t1

ATGGACTCTTCATTCCAGGACGTGTCCTTTAATTCTTGTTTGCTGTCGATTTCAAATCAGCTTACTCGTGAAGACCTCAAGAAAATGAAGTTTGTTCTTCCAGATTGTATTCCACAGGGAAAACTACAAAGTGTTGGCGAACCTTACGAATTGTTCTCTCTTATGATGGAACATGAGTTGCTAGCTAAAGACAACACTGATCTTTTGAGCGAATTACTGAAGTCCACCGGTAAAATGAATCTGAACAACGTATTACAGGGTTTTCTCGCTCCACAGCCTTCAGATACTGGCTTTGACGAACCTCCATGTTTACCAGGCTCATTGCCAAACAAACCTGTCCACTTTTATGGAAGAGACCAATTGCTTAATGATATTGTCGAAGTACTAAGTGCCAGTAATGGAAAACGGCTTGTGCTCATAACTGGTTTACCAGGTTATGGAAAATCATGCTTGTCTCAGCGAATTGGTCACGCAATGAAAGAAAAAGGCTGTGAGGTCATTTTTCTTTGTTTGAGAGAAGTAAAGTTTGTCTCCAGAATGTGTGAAAGGATTCTTCTGTGTCTCCAACCGACTATGTGTTTGGGTTCCAGGAGAAACCAACGCCAATTAGCCCTGGCAAGGCTGCAGTCCTTAACAGTAAAGACAATACTTGTCCTGGACAATGCGGAAGATATATTGAATGAATCAGAGGAAAACAAGAAATTCCACACATTTGTGTATGAAGTGGCGACCTACACTCAGCAGGTGAAATGCGTAATCACCTCTCGCGTATCGTACCCAGCCCCACTTCAAGTCTCCTCTTTCCCGGTCAAACTTCTCTCGTTGGAAAACGAGGACGCTGCTAAACTTCTGCAGGAAAAAGTAAAAGAAAACACTGCGGCTGCGTTGACCATGAAAGATGACCACGCTAAGGAAGTAGCTCAGCTATGTTTAAACATTCCCCTGATATTGCATGCTGCAGCGGCGTATATGGAAGTTGTTGGAGGCCCAGAAAGACTGATAGAAATTTTGCGAAAATATTCCACTCCTTTAGAGTTAGCAGACATGGAGGAGTTATGTCCAGAATTGAGAATGAAGACATTTCTCTCTGATTGCCTTCAGCAACTTGGACAAAACCTTGAAGAAGCTTTGGTCTCATTAGCTGTGTTTCCGGCCGCCTTCCATCGTCAACAAGTATCAATCGTGTTTGGTTTAGATCAAGCCGATTGTTCTATCAAGGTTGACTCGATCTTATTGCAACTGGTTAAGAGATCGCTTGTTCACCGAGATCTTGATTCGGACGAGTATTTTGTTCATCGTGTAATTCAACTTTGCTGCGAAGAGAAGACGAAAGGTGATGATAAACGTCTGCACACATGTTACAACCAGGCACGCGGGAGATTTGTCAATTACTACTTGGAACTTATCACGAAACTGCGCCGAGACTTCTTACGCAAAGACCTCCTGCAGGAAACTGTTTGCCTTTATCGCAGGGAAGAGCAGCACATTATTCAAGCAATCTCGTGGGCAACGGAAAATAACACGGAGACGGAGATTTCCACCCGTTGTGCGCAAATCCTTAATGGTTCGGTCGTCTTCTTGGCCAAAGTCATGAAACGAAGTGTGTTTGAAGAAATTTACAGAAGCGTTCTTTCAGCAATTAAAGATAACCTGTCTCTTGTGGCCGATTGCCTGACATGTGTGGGCATCAAACTGATTTATTCCTGTGAGTGTCATCAATGTTGCGGTATTATTTCCGATAGTAGCTATCAAGTTCTAAATAGGGCATTGGAGCTGTACAAGCAGGACTCAATTAATGAAGGGGAACTGGTGGCGCAGTGCTACAGCAAGATAGCTCGTTGCTTGGCCAAAAATGGTGATCACGTGACTGCTGAACAACTGAGTGGCAAGGCTTTGGAAATTAGAGAAAAGAACAAGGACAAAGAACCATTCAAGTACGCCGCTTGCTGTCACGATAGAGCAGCTGTTCTTGGAATGTTAGGGAAACACCAAGAAGCCTTTAGTCTCAGAGAGCACGCACTAAACACATATGCTGATCAATTGGGCGAACATCCATTTACGGGCTCACTTTGCAATTATCTTGGCAATGATTGTCTTGCACTGAATAAATACGACAAGGCAGTGGAATATTTTTCTCGTGCACTGAGTATAGGAAGACAATTTTTCAACCAAGAAACTGCGCGGACCTTCCATAATTTGGGCGAAGCTTACAAAATGAAGGGAGATTTCGTTAAAGCTATGGAAAATTTAGATTCAGCTGTGGACATTCAAGATGCCTTATTTGACGTTCCCCACGAAAAAATCAAATCCCTGGAATTGCAAAGAGAAATTTGCGCTCACTTAAACAACCAAGAATCTAAAGTTCAAGACCTGGAAAAGAAAATTCAAGAATGCGAGAATGAAGTGAACCGAGCGAAAGAGGTGAACAATTTGAGATTGCAAGAAATACTGGAATTTGCGAGTAGGAACTCTCCTTAA

Transcript

amic_s0116.g4.t1

CCTTGATCAGGGGATAGTTCTAAAATAACTGGCCCAGAAGGACCCTAAACAACAGGGCTACAAGAGAATGGACTCTTCATTCCAGGACGTGTCCTTTAATTCTTGTTTGCTGTCGATTTCAAATCAGCTTACTCGTGAAGACCTCAAGAAAATGAAGTTTGTTCTTCCAGATTGTATTCCACAGGGAAAACTACAAAGTGTTGGCGAACCTTACGAATTGTTCTCTCTTATGATGGAACATGAGTTGCTAGCTAAAGACAACACTGATCTTTTGAGCGAATTACTGAAGTCCACCGGTAAAATGAATCTGAACAACGTATTACAGGGTTTTCTCGCTCCACAGCCTTCAGATACTGGCTTTGACGAACCTCCATGTTTACCAGGCTCATTGCCAAACAAACCTGTCCACTTTTATGGAAGAGACCAATTGCTTAATGATATTGTCGAAGTACTAAGTGCCAGTAATGGAAAACGGCTTGTGCTCATAACTGGTTTACCAGGTTATGGAAAATCATGCTTGTCTCAGCGAATTGGTCACGCAATGAAAGAAAAAGGCTGTGAGGTCATTTTTCTTTGTTTGAGAGAAGTAAAGTTTGTCTCCAGAATGTGTGAAAGGATTCTTCTGTGTCTCCAACCGACTATGTGTTTGGGTTCCAGGAGAAACCAACGCCAATTAGCCCTGGCAAGGCTGCAGTCCTTAACAGTAAAGACAATACTTGTCCTGGACAATGCGGAAGATATATTGAATGAATCAGAGGAAAACAAGAAATTCCACACATTTGTGTATGAAGTGGCGACCTACACTCAGCAGGTGAAATGCGTAATCACCTCTCGCGTATCGTACCCAGCCCCACTTCAAGTCTCCTCTTTCCCGGTCAAACTTCTCTCGTTGGAAAACGAGGACGCTGCTAAACTTCTGCAGGAAAAAGTAAAAGAAAACACTGCGGCTGCGTTGACCATGAAAGATGACCACGCTAAGGAAGTAGCTCAGCTATGTTTAAACATTCCCCTGATATTGCATGCTGCAGCGGCGTATATGGAAGTTGTTGGAGGCCCAGAAAGACTGATAGAAATTTTGCGAAAATATTCCACTCCTTTAGAGTTAGCAGACATGGAGGAGTTATGTCCAGAATTGAGAATGAAGACATTTCTCTCTGATTGCCTTCAGCAACTTGGACAAAACCTTGAAGAAGCTTTGGTCTCATTAGCTGTGTTTCCGGCCGCCTTCCATCGTCAACAAGTATCAATCGTGTTTGGTTTAGATCAAGCCGATTGTTCTATCAAGGTTGACTCGATCTTATTGCAACTGGTTAAGAGATCGCTTGTTCACCGAGATCTTGATTCGGACGAGTATTTTGTTCATCGTGTAATTCAACTTTGCTGCGAAGAGAAGACGAAAGGTGATGATAAACGTCTGCACACATGTTACAACCAGGCACGCGGGAGATTTGTCAATTACTACTTGGAACTTATCACGAAACTGCGCCGAGACTTCTTACGCAAAGACCTCCTGCAGGAAACTGTTTGCCTTTATCGCAGGGAAGAGCAGCACATTATTCAAGCAATCTCGTGGGCAACGGAAAATAACACGGAGACGGAGATTTCCACCCGTTGTGCGCAAATCCTTAATGGTTCGGTCGTCTTCTTGGCCAAAGTCATGAAACGAAGTGTGTTTGAAGAAATTTACAGAAGCGTTCTTTCAGCAATTAAAGATAACCTGTCTCTTGTGGCCGATTGCCTGACATGTGTGGGCATCAAACTGATTTATTCCTGTGAGTGTCATCAATGTTGCGGTATTATTTCCGATAGTAGCTATCAAGTTCTAAATAGGGCATTGGAGCTGTACAAGCAGGACTCAATTAATGAAGGGGAACTGGTGGCGCAGTGCTACAGCAAGATAGCTCGTTGCTTGGCCAAAAATGGTGATCACGTGACTGCTGAACAACTGAGTGGCAAGGCTTTGGAAATTAGAGAAAAGAACAAGGACAAAGAACCATTCAAGTACGCCGCTTGCTGTCACGATAGAGCAGCTGTTCTTGGAATGTTAGGGAAACACCAAGAAGCCTTTAGTCTCAGAGAGCACGCACTAAACACATATGCTGATCAATTGGGCGAACATCCATTTACGGGCTCACTTTGCAATTATCTTGGCAATGATTGTCTTGCACTGAATAAATACGACAAGGCAGTGGAATATTTTTCTCGTGCACTGAGTATAGGAAGACAATTTTTCAACCAAGAAACTGCGCGGACCTTCCATAATTTGGGCGAAGCTTACAAAATGAAGGGAGATTTCGTTAAAGCTATGGAAAATTTAGATTCAGCTGTGGACATTCAAGATGCCTTATTTGACGTTCCCCACGAAAAAATCAAATCCCTGGAATTGCAAAGAGAAATTTGCGCTCACTTAAACAACCAAGAATCTAAAGTTCAAGACCTGGAAAAGAAAATTCAAGAATGCGAGAATGAAGTGAACCGAGCGAAAGAGGTGAACAATTTGAGATTGCAAGAAATACTGGAATTTGCGAGTAGGAACTCTCCTTAAACAATAGTTGTTCATTTGACGGTCACCGTGTTTTTCCTCAGTTGAGTGAATAGATTTCTTTCACTGAAAGCAACGTTTTGGATAAATCTTAATATCATGCTTAACACGTGAAAGGAATTTTTAGTGATAATCTGTTGCGCTTTTTAGCATAAATTTCGAGTTCTATTTCATGGTCAGTCAAAGAAATTGGCCACAATTTACAATTGTTGCTAAGTATTTACAAAATGAACCAAATATAAAAAAACTAAGCCTTATAAGGGACACCTGTGCACTTTCATATAATGCGCACATTACAGAACAGTATATCgttttcacatgacgtcgtggtagccatattggtggatcgaaagaaagaaggagcggccatgagggtggaccaaagtagtctttgaggaatagctgttattacagttagtagtggttttgacacatgaaaggggctattggctcgttttccattgttttgacccatcagcctcatctgcagttttttaaccaatgagaagcaaaacctaaaccaattgcaccttgttttcgtgatttttcccgcgctttaagcaagttaccgactgacaattgctaggaactgcgattggttcatgggactgtttcctcctgtggtgatgggtccaagcaatcactttggtatttgttttccCTTGCGTTTCTTAAAATCAATATGGTTGCTGGTCACATGTGTGAAAACCATCCTCAGGATAGACCATATTCGTATTCTCTAGTTTTACAAGTCAATAATGACTTTTAAGTAGCAAGTATTCATCTTTTATTATATTTCAGTTTGCAGCAGTTTGCACTTTGCTATATTGGCATAAAGTGCTCAATGCTGTGGTAGCAGAGCTAAGTATATATATATACGTATttaacaatgattccacgagcgtgcgttggatatgagatgatagatagccaacgagtcgcgtagcgcctagttgcctacaatcatctcatatccaacaagcgcgagtggaataattgttttattaaaaagcccccaaggtattcgacaaatcttctcgaatttgttcccgagagtcaaaagccagtctgtgaaatgtaactaattaacttaattaatttgtaaattgtcaacttgcatgttttgctttgactaacacggatgcttaaagtttcaaaataaagttctgaagttttt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF01335 all species →	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.