Gene detail

Detailed information of amic_s0116.g53.t5 in Acropora microphthalma

Genomic Location: sc0000116_pilon:561345...597603
NR annotation: XP_015761853.1, PREDICTED: tumor necrosis factor receptor superfamily member 1B-like isoform X4 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g53.t5

ATGTCGGAGTTTCCCTCATTGTTTCTCCTCTGCTTCGTTGTCCTAAGACCAACACCGTTGGCTGCCAAATGTCCTCAAGCACACTTTTGGAATGGCACCAGCTGTAACCACTGCTCTGGATGCCCGGTTGGGCAGGGGGTTAAGACCAATTGTTCTCAAAGCAGAGACACCATTTGCCAGAAATGTGTGCTTGAATTTGATTATTCAAATTCCTCGGGAATGGAAGCCTGCAAAGGTTGTGATCAAGACTCCAACTGCCTTCCTGGAAATCCCAAGGTGATACAGAAGTGCACTGTCACCTCCCCTAGGGTCTGCGATGGCTGCGAAGAAGGATTTTTCTTAAATCGTTTTGCAGGAGAAGAACGGGGGGGATGTATGGAGTGTTCCCCATCGTGCAGTGAGAATGAAATTGAAATCCAAAGCTGCAACACGAAGCACGATCGTGTTTGCAGCAAGCGGCCATCAACCACAGAACAAACCTTCACTAAGCGGCCATCAACCACAGAAAAAACCTCCACTAAGCGGCCAACAACACCCAGGGAAACCACTGAAACGCATGAAGTTTCCACTTCGTCATCTCCTGTTAACGATTCAGGAAAAGGAGATGACAAAGGATTGGAGTTTGAAGAGACAGACCAGCCTCTCCATAAAAAGTCATGGCTTTGGGCAGTTATAGCTGTTGTTGTGGTTATCGTTGCATTACCAGTCGTGGTTGGAACAGCGGTAAAATATCGTCAGCCGCGAACACGTGTTGTGATGGACAACAAGGAAGGTACTCAATTGATACAACAGCGCCAACCTCAGCCGCTTGGTCTGGACCAACCAATAAGAAGTATTGAAGTGGAAGGAAGGAGCTTTATAGCTGACCGATTGAATGACAAAGACTCACACGACTACTGGTTCTTTCTGAGAGTTGCAGAGAAACTTGAAGTTATTTGCAAGATGGGAAAAGAAAAAGCTGGTCCTTTGACACCCAAAGGCATATCCAACAGGATTAAGGCTAAAGGATTACAGAAACTGCGATGGTATTGTCAAATGTGCCAAAAACAGTGCAGAGACGAGGGACCTGGAAGAGTCCATGGAAATCAGGTTTATCAAGACTACATCAGTGACATGCACCATACACATATGAATGCAACACAGTTGGCTGCCAAATTGAACTGTCCTGAGGCACACTTTTGGAATGGCACAAGCTGTAACCGCTGCTCTGGATGCCCGGTTGGGCAGGGGGTTAAGACAAATTGTTCTGAAAGCAGAGACACTATTTGCCAGGATTGTTGGCTTGGCTTTGATTATTCGAATTCCACGGGAATGGAAGCCTGCAAAGGTTGCGATCAAGACTCCAACTGCCTTCCTGGAAATTCCAAGGTGATACAGAAGTGTACTCTCACCTCCGCTACGGTTTGCGATGGCTGCAAAGAAGGATTTTACTTAAATCTTTTTGCGGGAGAAGAAGGGGGAGGATGTATGGAGTGTTCCCAATCGTGCAGTGGGAATGAAATTGAAACCCAAAGCTGCAACACGAAGCACGATCGTGTTTGCAGCAAGCGGCCATCAACCACAGAAAAAACCTCCACTAAGCGGCCATCAACCACAGAAAAAACCTCCACTAACCGGCCATCAACCACAGAAAAAACTTCCACTAAGCGGCCAACAACACCCAGGAATTCCAGTGCCACGCGTGAAGTTCCCACTTTGTCACCGTCTCCTGCTAATGTGTCAGGAAAAGGAGATGGCAAGGGTTCGGAGCCAGAAAAGATTAAAGAGACAGACCAGCCTCTCCATAAAAAATCATGGCTTTGGGCAGTTATAGCTGTTGGTGGTGTTATCATTGCATTACCAGTAGTGGTTGGAACAGCGGTAAAATATCGTCAGCCGCGACCACGTGTGGACAACAATGAAGGTATCCGATTGATACGACGGCGCCAACCTCAGCCGCGTGGTCTGGACCAAACAATAAGAAGTATTGAAGTGGAAGGAAGGAGCTTTATAGCTGAACGTTTGAATGACAAAGATTCACAAGACTACTGGTTCTTTCTGAGAGTTGCGGAGAAACTCGGTATTTACCAAGAATGCAGTCATTTCACTTCCTCACGGAACCCAACAGAAGCCTTCCTCAAATTGTACTCTGAAAGGGAAGGAAGTACAGTGCGGGCCTTAGTGGGGGCGCTAAGGGAATGTGAGCTGACGCTTTTTGCTAGTGAAATTGAGATGAAGTTTGCTTCAGTCCAAGAAACCGAAGAATTCAAAGCTGCAGACATGGATGAAAGGATGGTCTAA

Transcript

amic_s0116.g53.t5

CGTGACCTGTCAGCGTCTTTCCGTGTACCAAGATGTTCATGATACAGATCACACCTTCCAGGCCCTATTCTTCACCGAAATCGTTCGCGTGCTGATTTCAAGTAAAAAGGAAGTCGTTGGAAACCTCATCTGACAAAAGAAGTCAGAAAAGTGGTGAGAAGCTGACATTGCTCTGCTTAAGTCTCATGCCAGAACCCTGAATTGGCGTCCAACTTGCTAAAGACGTAGGAGTCTCCGATCTCACCCAGGAGGGCGTCAATTTTTGGAAGTGGAGGGAAAGGGTCTTGTACGTCCTAAATGGAATCTTAAAACAGACGAAAAGCAACGAAAATTCCTGATCGGAAAATGAAAGTTGTCTTACGAAATGAGGAAAGCTTGGAATTTCAGAATACCAAACGTCAATCAACGTCTTGAAAGAAGATAATTAAATGATTGGGTCTAGTCACAAACAGCCATCGACCACCTTAGAACAGCTTTCTCGTATCGCTACGTGAAGATGTCGGAGTTTCCCTCATTGTTTCTCCTCTGCTTCGTTGTCCTAAGACCAACACCGTTGGCTGCCAAATGTCCTCAAGCACACTTTTGGAATGGCACCAGCTGTAACCACTGCTCTGGATGCCCGGTTGGGCAGGGGGTTAAGACCAATTGTTCTCAAAGCAGAGACACCATTTGCCAGAAATGTGTGCTTGAATTTGATTATTCAAATTCCTCGGGAATGGAAGCCTGCAAAGGTTGTGATCAAGACTCCAACTGCCTTCCTGGAAATCCCAAGGTGATACAGAAGTGCACTGTCACCTCCCCTAGGGTCTGCGATGGCTGCGAAGAAGGATTTTTCTTAAATCGTTTTGCAGGAGAAGAACGGGGGGGATGTATGGAGTGTTCCCCATCGTGCAGTGAGAATGAAATTGAAATCCAAAGCTGCAACACGAAGCACGATCGTGTTTGCAGCAAGCGGCCATCAACCACAGAACAAACCTTCACTAAGCGGCCATCAACCACAGAAAAAACCTCCACTAAGCGGCCAACAACACCCAGGGAAACCACTGAAACGCATGAAGTTTCCACTTCGTCATCTCCTGTTAACGATTCAGGAAAAGGAGATGACAAAGGATTGGAGTTTGAAGAGACAGACCAGCCTCTCCATAAAAAGTCATGGCTTTGGGCAGTTATAGCTGTTGTTGTGGTTATCGTTGCATTACCAGTCGTGGTTGGAACAGCGGTAAAATATCGTCAGCCGCGAACACGTGTTGTGATGGACAACAAGGAAGGTACTCAATTGATACAACAGCGCCAACCTCAGCCGCTTGGTCTGGACCAACCAATAAGAAGTATTGAAGTGGAAGGAAGGAGCTTTATAGCTGACCGATTGAATGACAAAGACTCACACGACTACTGGTTCTTTCTGAGAGTTGCAGAGAAACTTGAAGTTATTTGCAAGATGGGAAAAGAAAAAGCTGGTCCTTTGACACCCAAAGGCATATCCAACAGGATTAAGGCTAAAGGATTACAGAAACTGCGATGGTATTGTCAAATGTGCCAAAAACAGTGCAGAGACGAGGGACCTGGAAGAGTCCATGGAAATCAGGTTTATCAAGACTACATCAGTGACATGCACCATACACATATGAATGCAACACAGTTGGCTGCCAAATTGAACTGTCCTGAGGCACACTTTTGGAATGGCACAAGCTGTAACCGCTGCTCTGGATGCCCGGTTGGGCAGGGGGTTAAGACAAATTGTTCTGAAAGCAGAGACACTATTTGCCAGGATTGTTGGCTTGGCTTTGATTATTCGAATTCCACGGGAATGGAAGCCTGCAAAGGTTGCGATCAAGACTCCAACTGCCTTCCTGGAAATTCCAAGGTGATACAGAAGTGTACTCTCACCTCCGCTACGGTTTGCGATGGCTGCAAAGAAGGATTTTACTTAAATCTTTTTGCGGGAGAAGAAGGGGGAGGATGTATGGAGTGTTCCCAATCGTGCAGTGGGAATGAAATTGAAACCCAAAGCTGCAACACGAAGCACGATCGTGTTTGCAGCAAGCGGCCATCAACCACAGAAAAAACCTCCACTAAGCGGCCATCAACCACAGAAAAAACCTCCACTAACCGGCCATCAACCACAGAAAAAACTTCCACTAAGCGGCCAACAACACCCAGGAATTCCAGTGCCACGCGTGAAGTTCCCACTTTGTCACCGTCTCCTGCTAATGTGTCAGGAAAAGGAGATGGCAAGGGTTCGGAGCCAGAAAAGATTAAAGAGACAGACCAGCCTCTCCATAAAAAATCATGGCTTTGGGCAGTTATAGCTGTTGGTGGTGTTATCATTGCATTACCAGTAGTGGTTGGAACAGCGGTAAAATATCGTCAGCCGCGACCACGTGTGGACAACAATGAAGGTATCCGATTGATACGACGGCGCCAACCTCAGCCGCGTGGTCTGGACCAAACAATAAGAAGTATTGAAGTGGAAGGAAGGAGCTTTATAGCTGAACGTTTGAATGACAAAGATTCACAAGACTACTGGTTCTTTCTGAGAGTTGCGGAGAAACTCGGTATTTACCAAGAATGCAGTCATTTCACTTCCTCACGGAACCCAACAGAAGCCTTCCTCAAATTGTACTCTGAAAGGGAAGGAAGTACAGTGCGGGCCTTAGTGGGGGCGCTAAGGGAATGTGAGCTGACGCTTTTTGCTAGTGAAATTGAGATGAAGTTTGCTTCAGTCCAAGAAACCGAAGAATTCAAAGCTGCAGACATGGATGAAAGGATGGTCTAATTCTTAATTTGCAAGTTCGATTTGCCATTTGATGCCAGAGACGTATCTATTATGTACTCCTATTGGCTATACCAGATCCAAAACGCTCAAATGTCTGTAGTGGGAAAATGGCCGATGTATTGTTGAATTAGTATAAAATAGCGAAGAATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60870	DNA/RNA-binding protein KIN17 OS=Homo sapiens OX=9606 GN=KIN PE=1 SV=2
Q8K339	DNA/RNA-binding protein KIN17 OS=Mus musculus OX=10090 GN=Kin PE=1 SV=1
Q9ZVU5	KIN17-like protein OS=Arabidopsis thaliana OX=3702 GN=KIN17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002111 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF10357 all species →	Kin17_mid	Domain of Kin17 curved DNA-binding protein	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019447 all species →	Domain	DNA/RNA-binding protein Kin17, WH-like domain	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR052302 all species →	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR038254 all species →	Homologous_superfamily	DNA/RNA-binding protein KIN17, WH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605 all species →	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005035 all species →	Molecular Function	death receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0015026 all species →	Molecular Function	coreceptor activity	Interproscan
GO:0048406 all species →	Molecular Function	nerve growth factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0116.g53.t5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.