Gene detail

Detailed information of amic_s0116.g75.t1 in Acropora microphthalma

Genomic Location: sc0000116_pilon:798286...802524
NR annotation: XP_015761821.1, PREDICTED: rap guanine nucleotide exchange factor 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0116.g75.t1

ATGACTTCCCCTATTAAACGAATTATGAGCTTACGGGAGACCAAAGCAAACTCTACGTCTCCATCGACAACGTCACTTTCTCCTGGCAATCGTAAACCGAAATTTCTGAAGGTTCTTCGGAGACATTCATTTTATCAAGGAAGGCGTAAGAGCCGTGATGATGAAGCCCAGAAAGAGAAAGATCAAAGTCAAGACCTACCGGTTAAATCGACGGGAAAAATAGTGTCACAGGGACGTGATATGGAAGCTTTTGAACAGTATAACAAAGAACTGAAAAGCGCCATTCATTATTTCATTTTGGTTGTGGATAAATTTTCGAACAACATGGACATTGTAATGGCAAAGATCCCAGCTAACTGTTCCATTGTTTTGGAATCAGTAATTAACATGGACAGTATGTTAGATTCATGTCTTCGGTTGCAAAGTTGGAACAACACAGAATTGATTTCATACCGCAAACTCATTCATCAAAGAGTTGCGGATTTAACGAGGTGGAGTGATATTTTACTAGTGAGAGGCAATGTGACAGGCGATCTCATGGAAGGAGTGCGTTTTGTCAAAGCATTGGAGGAAAGTGTGCAAGAACTCGTCCAAATAGCAACTCCAAGACTTCGCAAACAAGAGGTTAACGACGAAATCAGAAATTCCATCTTCATGTTCGAGGGATCCAGTGAAAGTATTCAAGTTGGTGAAGACAGTTCTGAGGTTGGGCAGCTTCCATGGTCTGGATCCAATCGTAGAGACTCAGGTATCAGTGAAGGAAGCCTTGGAGGTACTGATTCATCCAGTACCAGACCATCACCTACAACTTCACGTGACTCTGGCAGAGGGAGTTCAAGTCACATACTTGATTCTGATAGCTCTCATCATAATGCCTATTTAAACCCACCTGAGCCATCCTTCAGGGCTCAAAAGTTTAACAGGAGCACATCAAATTACTACCCCCAACCCACCATTCCTAATGCAAAGAATTCTGATTGGTCTCTTAGCCAGACCAGTGACTCATCCAGTTACAGATCATTACCACAGTCACCTGCAAGCTCTCGCGATGAATTTAGTGGAAATTTTTACCTCTCTCCATGCAGTTCTGCTGGTGAAGAAGGTTCATTTTACTCTGCAGATGATGACGATTTAGACCCTCCTATCATCCAAGCAGAATACCTTGGTTCAACTGAAAATCACGAAATTTCAACTCCCAAGAAGAAATCATTTCAAGTTTACATTGAGCTTGTTGGAAATTACACACAACCATCTGATGGCATTCTGAAGAGGCCTTCATCAGCTTACGAGGGTTTCCAGGAAACTTTCAGGAGAAGTATAACGACACAAAGCAACTCCCCTGCTCACCATACACCAACATCCTTGAAGAAGGATATTTTTACGTTTCGAACTGTTACTGACTCAGAGCGTTCACACTCGTTGCCACTTCTCCAAAGTCCTGGTAAGACAACATTAAACTTCAGTCAGGATGTCAATAGGAATATAAAAGTCGAAGTCCCCAGGAATCAGCTTCTTCCTGTTGAAGAGGAGCGACGACGTATGCACAGTAATGCAAGCAGTAGCTCTAGTAGCTTAAGTGGGAATGAAGATGAGGATGTTAATACCCCTGCACTAGATTGCTTGGATGTCTCCAAATTTCTTGTCTATCGACAGGATGAAGATGGACAGACTTTGATTGGAGGTGCAATTGATGCACTTATTGTTCATGCCAGTGGTTCCACCAAGAAAGATTTGGTATATTATGAAGCTTTCCTCACAACATACAGAACATTCATCTCACCAAAGAATCTGATTGATAAGCTCCTCTACAGAGAAAGAAGGTTTCGTGAGAAAGGTTGCAAGAAGCCAAGTCAGAATGCTTTCTTTTTGCTCTTGCGAGTAGTTGATGAACTCAATGGTAAAGTTGAAAGGATCATCTTAGAACAACTTATGAAAGAAGTATATCGTCTGCTCATCAGTGGGCATGTGGTTCTTGGGAAGATTCTTCGCGACAAGATGCTCCCCAAATGTGAGAATTACTATCGATCACATTCCTTGTCAATGCCTGTTTATCATGTTGTTCCCGACCCTTCTCAAAAATACACTGTTCTTGATTTTCATGCAGAGGATGTAGCAAAGCAACTAACTTTGGTGGATGCAAAGAACTTTCATAACATTGAGATTCCAGAAATTCTTTCATGGGGGAAAGAGCAGAAAGAAGAACTGTCACCAAACCTCTGTATTTTCACAGAGCATTTTAACAAAGTGTCCTATTGGTGTCGCACTCATGTTCTATCATTTGAGAAACAGCGAGACAGAGAACTGGTGTACCAAAAATTTCTTAAGATAATGAAACATCTGCGAAGGTTTAATGACTTCAATTCTTTGTTTGGAATTCTCTCAGCATTGGACTGCTCTGCAGTCAGAAGACTGACATGGCCTAAGCATTTACCAGATGGACTTGCCGAGTATTCAACATTGATTGACAGCTCATCATCATTCAAAGCTTATAGGGATTCTCTCGCGATTGCAGAGCCCCCTTGCATCCCGTACCTTGGGCTAATCCTTCAAGATGTCACATTCGTTTATCATGGCAACACGGATGAGCTTCCTGATGGTAAGGTGAACTTCATGAAGAGGTGGCAATTGTTTAACATTTTGGACAATGTGCGACGATTCAAAATGACTCATTATGATTTTGAGTGGAATGATCAGATTGCACAGTTACTTCTTGGAATGGACAATTTCTTGTCAGAGGAAGAACTATATCAAAAGTCACTCAAATTGAAACCAAGAGAGTGA

Transcript

amic_s0116.g75.t1

GACAAAGGCTCAAGTACAACTGTCAAGTCTAACCAATCAAAAGTCACTGATTCCTCGTCCATTTCAAAGGTCACGTTTTGATCACGGCAAGTTCTCGAAGGACCGTGGAATTGGCGTGTTCTTGGAACCTCTTCCTCCCAGTTTCTGGTGTTTATATATTGAGGCAAGGGTTGCCTTTCTTTCCCGGAGCACAGCAGACGTCTTGAAATCCGTACGGAGAACACTTTGGCAGATGTCACCCGAGAGTAAAGATCTTATCCATAAAAGTAATTGAAGAAGAGGGATCTCGCTCTACGTCGTGACAGCATAAATCAACCAATATATCCTAGTGTTTGAGAAATTTGACTCCGAAATAGAAGATCCAATTAGTGGGCGCAAAGACGGAATTCTTCATATGGTGGATATCACGAATATTCTGTTGTTTGAAAACTAATTGGTAGCGTTTTTCGATGGCTAACAGACTGTTAGCGCAATAATCGTGCAACCGTAAACTGTAGCGGTAAGCTATTTCTTAATTATCGTTGCGGGGAAAACATATATTTGCACTTGAACTAGTTGTTTTCAACTTGGTGTGGGGTTTCATTCTGTGGATTCCATGCACATGTTTGGTGTGCTGTTGGACTTTTGTTTCATAGAAGTACAGGAGTAAACGCCTGCTAAACCCCGTGATTTTGTTCACGCGAAAGAATTGCGATGACTTCCCCTATTAAACGAATTATGAGCTTACGGGAGACCAAAGCAAACTCTACGTCTCCATCGACAACGTCACTTTCTCCTGGCAATCGTAAACCGAAATTTCTGAAGGTTCTTCGGAGACATTCATTTTATCAAGGAAGGCGTAAGAGCCGTGATGATGAAGCCCAGAAAGAGAAAGATCAAAGTCAAGACCTACCGGTTAAATCGACGGGAAAAATAGTGTCACAGGGACGTGATATGGAAGCTTTTGAACAGTATAACAAAGAACTGAAAAGCGCCATTCATTATTTCATTTTGGTTGTGGATAAATTTTCGAACAACATGGACATTGTAATGGCAAAGATCCCAGCTAACTGTTCCATTGTTTTGGAATCAGTAATTAACATGGACAGTATGTTAGATTCATGTCTTCGGTTGCAAAGTTGGAACAACACAGAATTGATTTCATACCGCAAACTCATTCATCAAAGAGTTGCGGATTTAACGAGGTGGAGTGATATTTTACTAGTGAGAGGCAATGTGACAGGCGATCTCATGGAAGGAGTGCGTTTTGTCAAAGCATTGGAGGAAAGTGTGCAAGAACTCGTCCAAATAGCAACTCCAAGACTTCGCAAACAAGAGGTTAACGACGAAATCAGAAATTCCATCTTCATGTTCGAGGGATCCAGTGAAAGTATTCAAGTTGGTGAAGACAGTTCTGAGGTTGGGCAGCTTCCATGGTCTGGATCCAATCGTAGAGACTCAGGTATCAGTGAAGGAAGCCTTGGAGGTACTGATTCATCCAGTACCAGACCATCACCTACAACTTCACGTGACTCTGGCAGAGGGAGTTCAAGTCACATACTTGATTCTGATAGCTCTCATCATAATGCCTATTTAAACCCACCTGAGCCATCCTTCAGGGCTCAAAAGTTTAACAGGAGCACATCAAATTACTACCCCCAACCCACCATTCCTAATGCAAAGAATTCTGATTGGTCTCTTAGCCAGACCAGTGACTCATCCAGTTACAGATCATTACCACAGTCACCTGCAAGCTCTCGCGATGAATTTAGTGGAAATTTTTACCTCTCTCCATGCAGTTCTGCTGGTGAAGAAGGTTCATTTTACTCTGCAGATGATGACGATTTAGACCCTCCTATCATCCAAGCAGAATACCTTGGTTCAACTGAAAATCACGAAATTTCAACTCCCAAGAAGAAATCATTTCAAGTTTACATTGAGCTTGTTGGAAATTACACACAACCATCTGATGGCATTCTGAAGAGGCCTTCATCAGCTTACGAGGGTTTCCAGGAAACTTTCAGGAGAAGTATAACGACACAAAGCAACTCCCCTGCTCACCATACACCAACATCCTTGAAGAAGGATATTTTTACGTTTCGAACTGTTACTGACTCAGAGCGTTCACACTCGTTGCCACTTCTCCAAAGTCCTGGTAAGACAACATTAAACTTCAGTCAGGATGTCAATAGGAATATAAAAGTCGAAGTCCCCAGGAATCAGCTTCTTCCTGTTGAAGAGGAGCGACGACGTATGCACAGTAATGCAAGCAGTAGCTCTAGTAGCTTAAGTGGGAATGAAGATGAGGATGTTAATACCCCTGCACTAGATTGCTTGGATGTCTCCAAATTTCTTGTCTATCGACAGGATGAAGATGGACAGACTTTGATTGGAGGTGCAATTGATGCACTTATTGTTCATGCCAGTGGTTCCACCAAGAAAGATTTGGTATATTATGAAGCTTTCCTCACAACATACAGAACATTCATCTCACCAAAGAATCTGATTGATAAGCTCCTCTACAGAGAAAGAAGGTTTCGTGAGAAAGGTTGCAAGAAGCCAAGTCAGAATGCTTTCTTTTTGCTCTTGCGAGTAGTTGATGAACTCAATGGTAAAGTTGAAAGGATCATCTTAGAACAACTTATGAAAGAAGTATATCGTCTGCTCATCAGTGGGCATGTGGTTCTTGGGAAGATTCTTCGCGACAAGATGCTCCCCAAATGTGAGAATTACTATCGATCACATTCCTTGTCAATGCCTGTTTATCATGTTGTTCCCGACCCTTCTCAAAAATACACTGTTCTTGATTTTCATGCAGAGGATGTAGCAAAGCAACTAACTTTGGTGGATGCAAAGAACTTTCATAACATTGAGATTCCAGAAATTCTTTCATGGGGGAAAGAGCAGAAAGAAGAACTGTCACCAAACCTCTGTATTTTCACAGAGCATTTTAACAAAGTGTCCTATTGGTGTCGCACTCATGTTCTATCATTTGAGAAACAGCGAGACAGAGAACTGGTGTACCAAAAATTTCTTAAGATAATGAAACATCTGCGAAGGTTTAATGACTTCAATTCTTTGTTTGGAATTCTCTCAGCATTGGACTGCTCTGCAGTCAGAAGACTGACATGGCCTAAGCATTTACCAGATGGACTTGCCGAGTATTCAACATTGATTGACAGCTCATCATCATTCAAAGCTTATAGGGATTCTCTCGCGATTGCAGAGCCCCCTTGCATCCCGTACCTTGGGCTAATCCTTCAAGATGTCACATTCGTTTATCATGGCAACACGGATGAGCTTCCTGATGGTAAGGTGAACTTCATGAAGAGGTGGCAATTGTTTAACATTTTGGACAATGTGCGACGATTCAAAATGACTCATTATGATTTTGAGTGGAATGATCAGATTGCACAGTTACTTCTTGGAATGGACAATTTCTTGTCAGAGGAAGAACTATATCAAAAGTCACTCAAATTGAAACCAAGAGAGTGAAGTGCACATTATTATCTAGCTGTTCAAGAAACAAGGACATTGTTTTAAAACAGTTCCTTGACGTTCTACAAGTTCAATTTTTTTTGCATTCAAGCAATCTAAAAACTTTTTTAATGTTAGCGTATATTTTGTCTCTTAGGGAAATAAAGAAAAGTAAAGGAGTGATTTTACTTTTTATGCCTATTTTCCTGGCACAATGTGTTTTATGGTGTTGTTATATTGTCATGGAGAACTTTCATATATTTGGACATTCCAGGTTGCCTTTGGGTTATGATGAATGCACGTAATTCAACAGATTAAATAGCAGAAAAGGTCAATTTTAAAGTACTAGTCAAGTAATTCTTAAGTGGTAACTTATTTTTGTACAAAACAACAATAATTACTTTTTACTTAAGCATGCCACTGTGTACCTGTTATATGGGAAAATACAAGTTCACAATTTTTTTGTGAGTTTGTGAGTACAGAATGGCACATAAGACTATAAGCTAATGTTGGTGAACTGTACAGGTGAAGGATTTTTATGTTGTTTTACTAGGGTCATACATAATATGAAAAATATATCATTACAATAATAAAATAATCATAAGCAAGGTCTTCCAGAAACATGTTTTATTAACCAACTGGTCTTAGTAGCCCTCCATACTTTTGAAATCACTGTGATGATCATTTATACTGATAATTTTTTTGCAAAATCGTATGTTGCTGATGAGATTGTAGCTTTGCCATTTAGATTAGTTTATTTCAAAATAAATCCTTAGTTACTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13905	Rap guanine nucleotide exchange factor 1 OS=Homo sapiens OX=9606 GN=RAPGEF1 PE=1 SV=3
O77086	Guanine nucleotide-releasing factor 2 OS=Drosophila melanogaster OX=7227 GN=C3G PE=1 SV=4
Q8IS14	Ras guanine nucleotide exchange factor J OS=Dictyostelium discoideum OX=44689 GN=gefJ PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618 all species →	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR000651 all species →	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR019804 all species →	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06277	RAPGEF1, GRF2; Rap guanine nucleotide exchange factor 1	-	Renal cell carcinoma	ko05211	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.