Gene detail

Detailed information of amic_s0117.g11.t2 in Acropora microphthalma

Genomic Location: sc0000117_pilon:367722...392965
NR annotation: XP_044183528.1, cilia- and flagella-associated protein 70-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0117.g11.t2

ATGGAAGAGGTGTCGTTTGAAGACGAAGATGGTGATCTCCGAGACAAGGAGGATTCTGCCTTTCGTCAAGAAGCAATGGAGGAGAAAAACCACGTGACATGGAACACAGAGAGGCGCTGCTTTTTGAGTGCGGAGGCAGCTGAGAGCCTACAGAACAAGATCGCTCAAAATCGATACTGGCCTGTGGAAATCGTACGTACTCCTATACAACAAGCAACAAAAGCCAAAGGGAAACAAGCCGCTGTGGAAGAGGACGTGTTGATATCTTACCATGGGGTGGCATATGTCAACATGGCGCCTTTGCTGTATCCTGGAGTTAGGAGAATACGAGGTGCATATATGGTGAAGCCTTTCATGGAAAGTGAAGTGTTCGAAAAAACCAAGAGAAAAGGAACATTAGCAGAAGAGGCCGTTAGAGTAGTGAGTGGAATGAACCGAGCACTGGCATCAGCCATGGCCCAGAAGGCTCCTCCACCCTCCAAACAAGGAAAGGCAGATGCTAAAACAAAGCCTCCGGCACCGGTTCTTAAGCCCGGCGATGCCACTGCAGCCGAAGGAGAATCGAATGAAGTCAAGAACCTGGAGGGACAGCAATACTTGGAATCCCGAACTTTTATCACGCTGGAATTTGTTTTGGACAATCCGCTTGTACCAAAGCGACCACCATCGTCTTTGGCGAGAAAGGTCGCAGAGTACATTCCTCCTCGACCTGTTTTTGCTCGCAAACCAGGAGGCTCCAAGAAGGCAGTGGAAGACTTTCACACCCAGCTGACGACGGTGGCAAATTCACTTCTAGAGGAATTCAGACAAATGTACGGTGACGATTTGATGAAAGGGAACCTACCACTGTCAAATGATGCCATGGATCAAAGGCGACAAAAGTTTCTTTACGAGCTGAATACGTCAGGGAAATACTTCGCTTTTAAGGAACAACTGAAGAACAGTGTTATCAAGATTGTCAGAGAAAAATACCTTAACACCACAGCTTTTGTTGACAAAGAAAAACTACAGGCGTTCCTAAGCGAACTCTACGTCTTTCTGATCGATCAGATGCACGCTGCATTGAACAAGTTTCTTTCCTCCGAAGAAACTCCTGAAGAGCCACCTCCAGTCACGGATACCGCAACTCTCAAACACTTCGCGAGGGAAGCAGAGGTAAATCAAAATTTTGAGCTGGCTGCCAAGTACTACCAAGAGCGTTTGTCTCGAAGCAAGAATGATCCTGATCACTGGTTCGATTATGGAACGTTTTGTCTGCTTATTGGTGACTATGGGAAGGCTGAAGAGTGTTTCAAAGAAACCTTATCTATAGCTCAGAAACATGTTCCAGGTCTTTTGATGTACGGCTGCATGGCGTTGATGAATGAGAGATACGAAGAAGCCGAGACATTCTTTGAAGCAGCCACATGCACAGAGAGCAAAAGTGTGATCGCTTGGACCATGTTAGGGCTGTATTTCGACAGCATACAGAATGATATCGGAGCCGAGCGCGCGTTCTTAGAGGCTAATCGCTTCAACGTCGCTGCGCCCCCATCTGTTGCACTAGAAGAAAAAGCTGCCGTTGCAACGGAGTTGGAGGGTTATGTATCGGAATCTGGCGCCGAGGATCCTTCTGGTGAAGGTGCTCATGGGACTGGCACGATAGAGGCGCCACGATTACCCGAAGTTTATGCTGATCAAAGGAGACGCGAGGAAGCTGCCCCAGGTGGCGCAACCCTCCCTCCCTCAGTCGTGATTAGCTCAGAGACGCCTTTAGGAAAACCTATCATCAAAACTGTGCCCCAGTCTTCCAAGCAGGGGTCACGTGTGCCAAGCCCTGGTAGCGCCCAGCGTCAATCGCCGACTCAAGAACTTGAACAGACAGTACCGCCGAAGGAGAAGCCAGCCTTGGTCAAGCCAAATGCTAGTATTTTCCTTCAGACCGCGAATTTTCTATTGGAAGTAAACGCCTTGCAGCTCACCGATGCTGCACTAGCGCACGAGCTGGTGGCTAGCAATGGCTCACCTGGAGGCGATTATTATGTGCTCTTGGGAAGACTGAAGATTCAACAGAAAAACTTCATAGAAGCAGAGGAAAATCTCAAACAAGCCATTGCCGTAAAACACGAGAATCCCGACGCCTGGGGTTTGATGGGCCATCTTAACTACTTGACCAGCAAAACCGAGGAGGCCCGGGAATGCTATGAGAGGACGCTGGACTACACGACCGAAGCCTCAGACATGCACGCTATCTATCTGAGGCTTGCTTCTATTTATCTTGAGCAAGGAGAGTTTGAGAAAGCAAAAGCAACGTTCCTAAAGGCTTGTATTCGCTCGCCATCTTGTGTGTCATGGCTTGGAGTAGGGATTGCGTCTTACCGGCTTGGAGACTTAGCGGAGGCTGAGGACGCACTGTCAGAGGCTAACATTCTCAACAACAAGGACGCTGAAGTATGGTCCTATCTGTCTCTGATTTGCTTACAGACTGGCCGACAACTGGAAGCCGAGCAGTCTTACAAATATGCACTCAAGTTAAATTTACAAGACGAAAAGCTCCTCGCTGAGATCCACCAAACGCAGCAGAGAGTTGGCTTCGGTAACCCAATGCTGGCATAA

Transcript

amic_s0117.g11.t2

TGCCCATTTTCCAATTTTCTTTATTTGCTCAGGAAGCTTCTAACCAGCGCAAATGGTCTTCCGCTCCCAGTGCCTCTGGGTCCTGTTTGTATATTCCTGATAGTACCATGGAAGAGGTGTCGTTTGAAGACGAAGATGGTGATCTCCGAGACAAGGAGGATTCTGCCTTTCGTCAAGAAGCAATGGAGGAGAAAAACCACGTGACATGGAACACAGAGAGGCGCTGCTTTTTGAGTGCGGAGGCAGCTGAGAGCCTACAGAACAAGATCGCTCAAAATCGATACTGGCCTGTGGAAATCGTACGTACTCCTATACAACAAGCAACAAAAGCCAAAGGGAAACAAGCCGCTGTGGAAGAGGACGTGTTGATATCTTACCATGGGGTGGCATATGTCAACATGGCGCCTTTGCTGTATCCTGGAGTTAGGAGAATACGAGGTGCATATATGGTGAAGCCTTTCATGGAAAGTGAAGTGTTCGAAAAAACCAAGAGAAAAGGAACATTAGCAGAAGAGGCCGTTAGAGTAGTGAGTGGAATGAACCGAGCACTGGCATCAGCCATGGCCCAGAAGGCTCCTCCACCCTCCAAACAAGGAAAGGCAGATGCTAAAACAAAGCCTCCGGCACCGGTTCTTAAGCCCGGCGATGCCACTGCAGCCGAAGGAGAATCGAATGAAGTCAAGAACCTGGAGGGACAGCAATACTTGGAATCCCGAACTTTTATCACGCTGGAATTTGTTTTGGACAATCCGCTTGTACCAAAGCGACCACCATCGTCTTTGGCGAGAAAGGTCGCAGAGTACATTCCTCCTCGACCTGTTTTTGCTCGCAAACCAGGAGGCTCCAAGAAGGCAGTGGAAGACTTTCACACCCAGCTGACGACGGTGGCAAATTCACTTCTAGAGGAATTCAGACAAATGTACGGTGACGATTTGATGAAAGGGAACCTACCACTGTCAAATGATGCCATGGATCAAAGGCGACAAAAGTTTCTTTACGAGCTGAATACGTCAGGGAAATACTTCGCTTTTAAGGAACAACTGAAGAACAGTGTTATCAAGATTGTCAGAGAAAAATACCTTAACACCACAGCTTTTGTTGACAAAGAAAAACTACAGGCGTTCCTAAGCGAACTCTACGTCTTTCTGATCGATCAGATGCACGCTGCATTGAACAAGTTTCTTTCCTCCGAAGAAACTCCTGAAGAGCCACCTCCAGTCACGGATACCGCAACTCTCAAACACTTCGCGAGGGAAGCAGAGGTAAATCAAAATTTTGAGCTGGCTGCCAAGTACTACCAAGAGCGTTTGTCTCGAAGCAAGAATGATCCTGATCACTGGTTCGATTATGGAACGTTTTGTCTGCTTATTGGTGACTATGGGAAGGCTGAAGAGTGTTTCAAAGAAACCTTATCTATAGCTCAGAAACATGTTCCAGGTCTTTTGATGTACGGCTGCATGGCGTTGATGAATGAGAGATACGAAGAAGCCGAGACATTCTTTGAAGCAGCCACATGCACAGAGAGCAAAAGTGTGATCGCTTGGACCATGTTAGGGCTGTATTTCGACAGCATACAGAATGATATCGGAGCCGAGCGCGCGTTCTTAGAGGCTAATCGCTTCAACGTCGCTGCGCCCCCATCTGTTGCACTAGAAGAAAAAGCTGCCGTTGCAACGGAGTTGGAGGGTTATGTATCGGAATCTGGCGCCGAGGATCCTTCTGGTGAAGGTGCTCATGGGACTGGCACGATAGAGGCGCCACGATTACCCGAAGTTTATGCTGATCAAAGGAGACGCGAGGAAGCTGCCCCAGGTGGCGCAACCCTCCCTCCCTCAGTCGTGATTAGCTCAGAGACGCCTTTAGGAAAACCTATCATCAAAACTGTGCCCCAGTCTTCCAAGCAGGGGTCACGTGTGCCAAGCCCTGGTAGCGCCCAGCGTCAATCGCCGACTCAAGAACTTGAACAGACAGTACCGCCGAAGGAGAAGCCAGCCTTGGTCAAGCCAAATGCTAGTATTTTCCTTCAGACCGCGAATTTTCTATTGGAAGTAAACGCCTTGCAGCTCACCGATGCTGCACTAGCGCACGAGCTGGTGGCTAGCAATGGCTCACCTGGAGGCGATTATTATGTGCTCTTGGGAAGACTGAAGATTCAACAGAAAAACTTCATAGAAGCAGAGGAAAATCTCAAACAAGCCATTGCCGTAAAACACGAGAATCCCGACGCCTGGGGTTTGATGGGCCATCTTAACTACTTGACCAGCAAAACCGAGGAGGCCCGGGAATGCTATGAGAGGACGCTGGACTACACGACCGAAGCCTCAGACATGCACGCTATCTATCTGAGGCTTGCTTCTATTTATCTTGAGCAAGGAGAGTTTGAGAAAGCAAAAGCAACGTTCCTAAAGGCTTGTATTCGCTCGCCATCTTGTGTGTCATGGCTTGGAGTAGGGATTGCGTCTTACCGGCTTGGAGACTTAGCGGAGGCTGAGGACGCACTGTCAGAGGCTAACATTCTCAACAACAAGGACGCTGAAGTATGGTCCTATCTGTCTCTGATTTGCTTACAGACTGGCCGACAACTGGAAGCCGAGCAGTCTTACAAATATGCACTCAAGTTAAATTTACAAGACGAAAAGCTCCTCGCTGAGATCCACCAAACGCAGCAGAGAGTTGGCTTCGGTAACCCAATGCTGGCATAAATCAGTGCTTTGTGTTCTCCTTGCAACCACGTGACTCAGTTTTAGAAACTCACATCTCACAGCCGACATTCTGAGATCGTATCATAATTTCGAGATGGAAGAAAACTTTTATGTATAACTATTGCGCATAGAAGGAGGTCACCTCTTGTCAAACATCCACGGCTTTAAAGAGTGGGAACTAGAATTTGATAGATGTTCATCACCTGTTTGCGTGGGCAGTTTCACGGCTTAGTTCTGTTTCTGTCGCCCGACTGTAAATATTTAACAAGTTTATTTTAAATTTACAAGACGAAAAGCTCCTCGCTGAGATCCACCAAACGCAGCAGAGAGTTGGCTTCGGTAACCCAATGATGGCATAAATCAGTGCTTTGTGTTCTCCTTGCAACCACGTGACTCAGTTTTAGAAACTCACATCTCACAGCCGACATTCTGAGATCGTATCATAATTTCGAGATGGAAGAACACTTTTATGTATAACTATTGCTCATAGAAGGAGGTCACCTCTTGTCAAACATCCACGGCTTTAAAGAGTGGGAACTAGAATTTGATAGGTGTTCATCACCTGTTTGCGTGGGCAGTTTCACGGCTTAGTTCTGTTTCTGTCGCCTGACTGTAAATATTTAACAAGTTTATTGTAACTGGTGAATGAAAACCTTTTTTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T0N1	Cilia- and flagella-associated protein 70 OS=Homo sapiens OX=9606 GN=CFAP70 PE=1 SV=3
D3YVL2	Cilia- and flagella-associated protein 70 OS=Mus musculus OX=10090 GN=Cfap70 PE=1 SV=2
Q95LN2	Cilia- and flagella-associated protein 70 OS=Macaca fascicularis OX=9541 GN=CFAP70 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004045 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052628 all species →	Family	Cilia- and flagella-associated protein 70	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44314 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0070062 all species →	Cellular Component	extracellular exosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24932	CFAP70, TTC18; cilia- and flagella-associated protein 70	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.