Gene detail

Detailed information of amic_s0118.g5.t1 in Acropora microphthalma

Genomic Location: sc0000118_pilon:90753...95785
NR annotation: XP_015775486.1, PREDICTED: 28S ribosomal protein S2, mitochondrial-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0118.g5.t1

CGGGAAGCGTTCGAGACCTTCGGCTTATTTCAGGTTTTAGAGGAAACTCTATCATCTCGTCGCTTATAAGGCCTATGAAAACAATGAAACCTTCTTGCTCGAAGTCGACTACAAAGTTAACAGTGCCTAATCATGATCAGTCGGCGGATTTCCCTGTCAACAAAGAAGCAATTGACCAAACAGACAATGAAGTTGCATCTGTTGTTATGCCTTTCACTGTACAGATGGTGTTGATATTTACACAAGTGATAACATCCTGAGGCATCCAGATTTCTTTGAAGTTCATAAATTATTCACATTGAAGGACCTGTTCAATGCAAAAGTACACCTTGGTCATCATGAGGGATGTTGGAATCCCTTGATGAAGCCTTATCTCTTTGGAACAAGAGAGCATCAGCACATCATTGATCTCAATCAAACAGTCAAGCATTTAAGGCTGGCCTTGAATGTACTAAGCCACATCACCTACAGAGCAGGAATTATTCTCTTTGTTTCTACACACCCACAGTTTGAAGAGTTGACCCAATACACTGCAAGAGAATGTGGTGAATATTTTGTAACTCGAAGGTGGCGTGGAGGAACGTTAACAAATCCTTTGATGTTGACTGGGATGACAAGAGTTCCAGATTTGATTTTATTCTTGCACTTGCCATCATTGGGAAGAAATACCCTTGCAGTTAAAGAAGCAGCCCAAGCAAATGTTCCAAGCATTGGTATAGTGGACAGTGATTGTAATCCTAATCTTATCATGTACCCCATACCGGGAAATGATGATTCTCCTTCTGCAGTTGAACTGTACTGTAACTTATTCAAGAAGGCAATTTTGAATGCAAAGGAAGTGAGACAGTTGAGGAGATCAGCAGACATCCCAGAAGAAAAAATAGTCAATGAAGATTTAGAAAATGCCAATTTGGATGAACTGTTGTAGGAAGCTAACAAGTGTCAAAGACATTTAACATGGAAACCTGACATAAATAGCAAGAAAAAAATCGCATTATCATGACCAGTGTGAAACTCCTGTGTACCAATAGACTTCTTTTTTCAATAAATTATTATTTGCAAAATCATTTAATTCATGCAACTTTTGGGACTTTTTTTCTTCCCCTGTGTAAGACTCGGAAATCTTTTGCTGTTAGATCATGGAATCCTGGGTTAGGAATCCGAAATCTAAAAACCAAGACTGTCTGTAAAATTTTAAATTTTTATCTCAAGAGGATCTTAGCAGCCTGCTCTCAGTTCAAAGCACTAACTATTGGATAAATAACtttataccatgccatagaaaatacagccaatcagaatgcaggaaagctgttgtatattcgtcagtattccacctcaccatcgcatcgatcattgcaattcaactgtatcacacccaaccttgcgttgagacccatcgtgcatttagattcccgccagtttctttcaactgttgtttgagccatgtgagagccaaattttttttcactccgcttcaagtttgaggtaaaaaactattgtttgtaatttggtcatgaataataattattataatcagcaaaaagtttgaaaagGTTTAAAAACACTTTCAACAGGGTGGACATTAGGAAGCCATTTCAAAACCATTCAAGTGTGCACGTATTTCGCATTGATTATGCTGgccttgctgaccaccgtattttctatggcatggtgtgaaatagttatgcaacactttctcgtggtataaccatgtaatatcgcactcgtcactcggtattttgttggtatacacactcacctgaaggctcgtgtgtgtaccagaaaatacaagtgactcatgggatattccatgctacaccactcgaaagcattgcataactaGTATCtctactgggtaggcaactcaacaggttttgatagtacttatccagtcgatagCCCTATTCAAGCTATGAACAGCTAAGGCCTGAACAAGAAAAGGCAAAAGCAAACTGTGTAACTGTGAGATCATACTCTTTCATTTTAAACCTCCCAATGATGTGCAATGGTATGTGAATTATGTAAATATAAAACAATTTGCAATATTTCATATTTCTGTTTTCCACATAACCTTGTTGCCACCCTTTGGAGAGGAAGAGGCAGACAGGATTGTAATTGATTTTCAGACTGTTCATAACTGTTTAAATTGAACTTACAGTTTCCCTAAAGTTGTTCTACTGTGTTCCTGGAGGGCAAATGAATTAGAAAACAGTTTGTCACTTCAGATTCACAATAATTATTGATTATTTCACATATTTTAATGCTTATTGATAAAAATATCAAATGATCAAAATTGGCAAATTTCTGTCAAATTGTTTCTAATACTAAGTGACCGTCTGACCAATAATTTTCATTTCGTAACAGGTCATTTCCAAGGTCAGTACCAATAATAATTATGAAAAAGCTTAATTTGTAAATGCTCTATTCTAACAGCACTTACACCATACAAAGACTAGGGGTTGCTGCTTTCATTTTTTTCCATCTTAAAGAGTTTGCGTTAACATGGAAAAGTGAACAGCTTCATGAATTGTATCCACCCCCTGAAAAAAATGGCTCAAAGCCAATGGCTGCAAAACACTGAGCAACAAATACAATTGCATTGTCATCAGTTTGTAGTAAATTCAGCTTCTTGAACTAAGAATTTTTACAAAGCGAGATTTTGAGGCAATAACAGTTTCACTATATTAACTTAATAGTAATAGTTATATTGTTTACTTCATGGGCAGCATCATAATATAAAATCAAATTACTCACAAAACAATATTTTCACCAAAAGAGGACAAATCTAAAGAATATAAATGGCATTTACAAAAACAAAACTGCCTGATTTCAAGATATCCAACTATTTTACAATAAAAACATTACCAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y399	Small ribosomal subunit protein uS2m OS=Homo sapiens OX=9606 GN=MRPS2 PE=1 SV=1
P82923	Small ribosomal subunit protein uS2m OS=Bos taurus OX=9913 GN=MRPS2 PE=1 SV=2
Q924T2	Small ribosomal subunit protein uS2m OS=Mus musculus OX=10090 GN=Mrps2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00318 all species →	Ribosomal_S2	Ribosomal protein S2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005706 all species →	Family	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Interproscan
IPR023591 all species →	Homologous_superfamily	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Interproscan
IPR001865 all species →	Family	Small ribosomal subunit protein uS2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12534 all species →	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02967	RP-S2, MRPS2, rpsB; small subunit ribosomal protein S2	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.