Gene detail

Detailed information of amic_s0119.g46.t1 in Acropora microphthalma

Genomic Location: sc0000119_pilon:540583...544011
NR annotation: XP_015751482.1, PREDICTED: pyruvate dehydrogenase [acetyl-transferring]-phosphatase 2, mitochondrial-like isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0119.g46.t1

GATAGTCGTTACAGCAGCATTATTTTTTCGATGTTGATGTATTTGTTATGAATAAAGCGGAGGTTATTGGAACTTTTAGCAAGTGGAAGTGGCCTGTGGTTGGTGTCGCAGCTGCGTTTGTTGGTTCTATGTACACTTATGGTCTCAATAGCAACTTCACACTTAAAGCACGAACTGGAAACGAAGACACTTCAGGCGTGATTGGATTAGGGGACTTATTACAGAAACTGATTCAGAACTTTATACAAGGTTCAAAGGGTCCAGAGAAACCTCCTTTGAGTCCGAAAGAGGCAAGTCAGATATTGAGAAGGAACGAAAAGAGGACTGATGTAAATGTTGGGGCTGTTTCTTATTACGAAACCAACAATTTCGCTTCCAATGATCCTTGTGAAGATCGTGGGAATGAATGGCTATTGTTAAAAACCAATGGAGCAGCCTTTGGTGTGTTCGATGGACATGGCGGCTGGCAATGCGCTGAGGTCGTGAAAACTAGATTGCCGTTATACGTAGCATTATCTCTTCTCTCCAAGGTTGAGTTGACCCTTGTGGAAAGGGATGATTTGAATGGTTCATCATCCACCAATAAGTTCGTTTTCAGTTTTCAAAAAGACAAAAGTCTTCCTGCTGAAGATAACATTTCCAGTAACAGTGTTGGTTACACTTTAAGTCAAAAGCAGGAAGTTTTTCACACAGGACCAATGTATCTGGTGAAGAATTTGATTGAGAAGCCGTTTAACAACCGTATGCCAATTGCTGAGTCACTCAGTTTGGCTTTCACGCAGTTAGACGACGACATTTCAACCGAAGCCATACCAGTCAAAGTCCTTGATGAGTCATTTTTTGTTGGTGCAACAGGTGCCTGTGCATTGATATCCTATATTGAGGGCGAACAACTTTATGTTGCTAATGCAGGTGACTGTAGAGCAGTTTTGGGAAGCGTAAACCAGGATGGTTCTTGGCTCGCAACTCCTCTGACTGTTGACCAAACAGCATCAAATTCAGAGGAAGTGGAACGGCTTCATGCTGAGCATCCAGGAGAGGAGAATTTTGTCATAAAGAATGGTCGGCTGTTGGGACAGTTACAGCCATTGCGGTCTTTTGGTGACATTCAATATAAATGGGATAAAGTAACTCATTCTCATGTTCTAACTCAAGTGTATGGTGGCCCAATAGTCCCACCAAGTATGTACAAAACACCACCATACCTTACTGCAAAGCCAGTTGTTACTCAGCACCACTTGCAATTTCATGATAAATTTCTTATCCTGGCCACCGATGGTCTGTGGGATGTGCTAAGCAATGAACAAGCAGTTGGATTGGTTGCAGAGTTTCTTGAACAGCAAGGTAAATATAAAGCACAGGCATCAGCAGCTGCTACCTCTGCCTCACAAAATGATATTTTGGAGCACAATGCTGCAACTCACCTTATCCGCCATGCCCTGGGGGGTACTGACCATGACTTTGTAGCACAGATGTTATTGGTTCCAGACCAGTATCGGCGGATGTGGCGAGATGACATTACTGTGACTGTGGTCTTTTTTAATTCTGACACCTTTTTATCCAAGCTGTGACACATATTTGACCATTGAATGTATAGTAGCCATAACAGGTAACACCTTTCAATTAACAGCATTAACCTCAATTTGTTGCTTATGTGTCTGAATTGTGTCAACTTAAGTGCTGTCAGGAACATGATTGTTAATAATATTGCTTTGGGCCTATTGAAATGCAGGTTTGGTTCATTAATTATTATCATTAAACAATATGTTGTACCCAACTTACACTGTACCTGGACATCATAAAATTTGAAataaagctaattataattttaatgagtaagtgataatTGACTAGCAAAGTATTGTATTTTTGGCAGGTTGTATTTTCAGTAGATTGTGGTTAATGGTCATTTCTTACTCTTGGTAAATGACAAGACTACTCTTGTACAAGTTTTAACCTGAATGAACTCTCTCTTGCATTGTTCATTCATGTGTTTCCGATTTCTGAGGATCTATGTTCTGTGATGGCAAGTGGTGGAACCAATACAACCTGGACCACACAGATCACAGTGAAATTATTGGGAAACAACACattgacataaatgtgtatgttccttgcaggttttttttaatgtgctatttaagcagtagtgagtggggatttgaaccctgacctctctaatgccagaacagtgctccaccagttgagctatcaggcaaagtgggagctggtcattatgcaggttgatgataagcttgCAAGGAACATACACATTAATTTCAATCCATATTTCCAATACATGAAATCTGTGTATTTCATCATATGTAAACAGATTATTGGTTAAGAAGGGGTTAGCTTTAATTCTGGAGCCCTTCCTTTCTCTCTGATTTTTGTACTTGTGAAAACAGGCTTTGAGATCCAGGTGGTAAGATATGCAGCCAATTATTGGAGCCTGTTATCAGTTGCACCACTTGCCATCACTGTCACAGAATTGAGGAATACAAATCATTAGCTATTGGAAAACATGTCGAGATATGCCATATATTGATTACCAATCCTGACATTTCACATCAGCTCACAGTTTTGAGGAAATGTGAAGGAAAACTGGACTTAATTAAAAAACAACAGTTATCTTCAAGACAGTTAGACTTGAAAATGAAGTCATGCTGGCTTCAAAACATTGTCTACTTTCATACCATCTGAACTACATGAAACAATGTGATTGACCACAACAATGTCATTTTTGATTGGCTAAGAGGTTGATCTTTCAACCTGTTCACTGAAATAATTGCTTGGGTGTGCAACTAGTGATACATGATGGGGAAAGTACACAAACAAAAATAACCTGATGGTGACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q504M2	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial OS=Mus musculus OX=10090 GN=Pdp2 PE=1 SV=1
O88484	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pdp2 PE=1 SV=2
Q9P2J9	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial OS=Homo sapiens OX=9606 GN=PDP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002400 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481 all species →	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR015655 all species →	Family	Protein phosphatase 2C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832 all species →	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0004741 all species →	Molecular Function	[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01102	PDP; pyruvate dehydrogenase phosphatase	EC:3.1.3.43	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.