Gene detail

Detailed information of amic_s0119.g53.t1 in Acropora microphthalma

Genomic Location: sc0000119_pilon:715512...728549
NR annotation: XP_015751473.1, PREDICTED: ATP-dependent RNA helicase DHX8-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0119.g53.t1

TTGTTCATATGACATTTTTAGCGGATGGTATCAAACCAGTCTTTGCACAAGACATGCGAGGTATCGGATTGGCCAATGATGACATGCCTGAATGGAAAAGAGCTACATTTGGAGGAAACAAAGCGTCATATGGGAAGAAAACCAATTTGACTATTCTCGAACAACGACAAGGGTTACCCATATACAAACTAAGGCAAGAGCTATTGAAGGCTGTCCTTGAAAACCAAGTTTTGATTGTTATTGGAGAAACAGGCAGTGGAAAGACAACACAAATAACCCAGTACTTAGCAGAGGAAGGTTTCCTTTCTACCGGCAAACTTGCGTGCACTCAACCCCGAAGAGTAGCTGCGATGTCTGTAGCCAAGAGAGTGTCAGAAGAATATGGTTGTCGCCTTGGGCAAGAGGTTGGCTACACGATTCGATTTGAAGACTGTACAAGTACTGAAACCAAAATTAAATACATGACTGATGGAATGCTTCTGAGGGAATGTCTCCTTGACTCTGACCTCAATCAGTACGCCATTGTTATACTTGATGAGGCCCATGAGCGCACAATCAGTACTGATGTTCTCTTTGGCTTGTTGAAAAAGACTGTGAAGAAGCGCCCAGATTTGAAGTTGATTGTGACATCAGCTACATTAGATGCCGTAAAATTCTCAACATATTTCTTTGAGGCTCCAATATTTACAATCCCTGGCCGAACTTTTCCAGTCGAAATTTTGTACACAAAAGAAGCAGAAACAGATTACCTTGATGCTTCCCTCATTACTGTTATGCAAATCCATTTGACTGAACCACCCGGCGATATCCTAGTATTTTTGACAGGCCAGGAGGAAATTGACACAGCTTGTGAGATACTCTATGAACGCATGAAGAGTCTGGGCCCTGATGTACCAGAACTAATTATTTTGCCAGTGTACAGTGCTCTACCATCAGAGATGCAAACCAGGATATTTGATCCGGCTCCTCCAGGCAGTCGAAAGGTTGTGATTGCTACCAATATTGCCGAAACGTCACTTACTATAGATGGCATATACTATGTAGTTGACCCAGGATTTGTCAAGCAGAAAGTATATAACTCAAAGTCAGGAATTGATGCTTTGGTTGTGACACCAATTTCTCAGGCTCAAGCTAAGCAACGCTCTGGTAGAGCAGGTAGGACAGGACCTGGTAAGTGTTATCGCCTTTACACAGAGCGTGCTTACAGAGATGAGATGTTGCCTACTGCAGTCCCCGAGATTCAGCGCACAAACCTGGCTAGCACTATACTGTCACTCAAAGCAATGGGCATCAATGACCTTTTGTCCTTTGATTTTATGGATCCACCACCTATGGAGACAATGATTTCAGCTATGGAACAACTACATTCTCTCAGTTCCTTGGATGACGAAGGCCTACTGACCAGGTTGGGAAGGAGAATGGCCGAATTTCCTCTGGAGCCACAATTGTCCAAGATGTTAATCCAGTCTGTTCATCTTGGATGTAGTGATGAAGTATTAACTATCGTCTCCATGCTGTCTGTTCAAAACGTCTTCTACAGACCGAAGGACAAACAAGCTCTTGCTGACCAAAAAAAAGCTAAATTCCATCAGTCTGAAGGAGACCACTTGACCTTGCTTGCAGTGTATAATTCCTGGAAGAACAACAAGTTCTCAAACCCTTGGTGCTTTGAAAATTTTGTGCAGGCCAGGTCGCTGAGACGAGCACAAGACATCAGGAAACAAATGCTTGGAATTATGGACAGGCACAAGCTTGATGTTGTATCATGTGGCAAGACCACGTCACGCGTGCAGAAGGCGATAACGAGTGGTTTCTTCCGCAATGCAGCAAGGAAAGATCCACAGGAAGGTTACCGCACAGTAACTGATAACCAGGTGGTATACATTCACCCGTCGAGTGCGCTTTTTAACCGACAGCCAGAATGGGTTGTGTATCATGAGCTAGTGCTTACAACAAAAGAGTACATGAGGGAAGTTACAACAGTCGATCCTAAGTGGCTTGTGGAGTTCGCTCCTGCATTTTTCAAGACCGGAAATCCAACCAAGCTGAGCAAGCGCAAAAGACAAGAAAGATTGGAGCCTCTATATAACCGGTATGAAGAACCCAATGCTTGGAGAATTTCGAGAGCCTTTAGAAGAAGATAACTTACCTAATTCAAACTATTGCAGTAGTGCGTTGAGTGGTGATGAAGCTTTAAGAGAAGCACTTTGCTGTACTTTTTCCAATTATTGTGCGAAGATGTCAAAGAAGGGACGCTTTTTACGAGACGGTTTTCAGTAAAGAAAGGCAAGAAATCTTACAAACTGTTAAGTCGGAAAAGAGGTCCTATGGCTAGCTCTGTTGACAAAGCTGGCTGAATTGAAGTGTTTCTGTTAGAAATGTATGGGCAGAGTAGAATGCATAGAGCATAGGTTGTTTTTCTCTATAATGTAAGGAAAAATTTACCGAACAATTTTTCGCCCACACAAATATACAACTGAGAGTCCACATTTCTTTGCCTTCGTTTCAATACTCCGATTAGTGTTATTTCGAGTATTGTGTACACATGGTACACAACTGTATTGACCCCTTCCCCAGAGAGAAGCTCTTCATCGCCAAGAAAAACCCAACAAATTTGCGTTATCTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14562	ATP-dependent RNA helicase DHX8 OS=Homo sapiens OX=9606 GN=DHX8 PE=1 SV=1
A2A4P0	ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1
A1Z9L3	ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0119.g53.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.