Gene detail

Detailed information of amic_s0122.g2.t2 in Acropora microphthalma

Genomic Location: sc0000122_pilon:67839...103465
NR annotation: XP_044164274.1, band 4.1-like protein 4 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0122.g2.t2

ATGATCCCAAGGAACATACTCAGGGTTATGTGTCGGAATTCAGGTTTATTCCCAACCAGAGTGAAGAACTGGAAGCCAAAGTTGGCCACATGCACAAGAAGCTTGGCTGAGCTGGGAGAGTATGATCCCAAGGAACATACTCAGGGTTATGTGTCGGAATTCAGGTTTATTCCCAACCAGAGTGAAGAACTGGAAGCCAAAGTTGGCCACATGCACAAGAAGCTTGGACAAATGGTACCATCAGTGGCAGAGTTTATGTATCTCGACAAAGTCAAGTGGTTGGAAATGTATGGAGTTGATCTACATCCAGCTAAGGGGGATGATTTTGTGGAGTATTTTGTGGCCCTTAAGCCATCTGGGTTAGCGGTTTACAGGAACAAGACTCGAGTGGGTTCTTATCTTTGGTCCAAAATAGAAAAAGTGGATTTCAAAGGCAAAAAGTTCTACCTAACTGTGAAAGGAAAAGAGGATAGAGAATCTACCTTCAAATTTTATCTCCCAACCAACTCTGCTTGTAAGCATCTGTGGAAATGTTGTCTTGAGCACCACATATTTTTCAGACTGGATAAATCCAAAACTGTTCCTCGTCGTCGAAAAAGTATCCTTTTCCGCACCAGCTCATCTTACAGATACAGTGGGAGAACCCAAAAAGAGGCTTTAGAAGATGGAAAAAAGATTAAACGTTCTGACCCAGAAGTTTCAAGAAAACTCAGCAAACGCTATGAAAGGAGATCAAGTAGTGTATCTGGAGAAAAAGCTGTAAGTAGTGTTACAATCACTGCGACCAGTACATCACAAGTTCAGATACGACGTTTCAGCGAAACGGAAAAGCAAGGAGACTCTACAACCGTGCCTGTACAAAGTCCAAATGGAACTGTAACCAAGACGGACGGTGACCCAAGTTCCAGAAATGGCGCGAACACCGCAGTAGATGGCAGTGACAATCCGGGCCCTGCGTTGCCATGGGAACAATCTGCTCAATTGCAGGGCGGCTTGTACACGCCAGCCCCAGACTCACCTCATTCCATGAAAAGCACAGGGTCTGGTAGAGTCAAGAGATCCCCTAAGTTTCCAAGCCCGCATCGCCGATCAGCACCTAGCAGCGGCAGTGAAACAGACACACCTAGAAGAAGAGGTCGCAAAGCTTACTCTTCCGATGATGACACTGGCAGAAGACGACGACGAAGATGTCGTCATCATCACCGAGGACACCATTCCGCCGAGTCAGGGAGTGATCGTGACTCATCTTACAGTAGAGACGAACGCAGGCGCAACAGATCGTCAAAAGACATGGAAGAGTTTCTTAAGATGTCAGACGCAGCGCCGTATTTCTGGAATGAAAACACAAACAGGAAAGAACGAGGAAGTGGCTCAGAAGGGTCGcatcatcatcatcatcatcatcatcGGCACAGGCATCGTGAAGCCGATGCCAGAAGCGATGGTTCAGCATCGAAACTCAGGCACAGTAAAGCCGCCAGTGAAGACGCCGAATCGGGAATGGTTCCAGCGCTGGACGTAATTCACTCGAGAGTATCTGTTGCTCGAGTCAAGGACGGAAGTGGCGGCAGGCACCGGCATCATCGCCATCACCGTCATAGTTACCTTGGTTACCAATCCAGTGAATCTGGGTACTCCGCTATGTCTGCGCCCACTGCACCTAAGAGCTCTCAGGTGTTGTTAGAGTTAGGCCCAGAATCGGTGTCCACACAAAGACATGTCCCGCTTTCATCGCAAGCAAGCCCCAGGATGACTGCGAACCCCCATTCTCAATCCAGACCGGGGAGGGGAGGCTCATTGCCGAGAGAGGGAAGCCCCGATAAAGCCAGTCAATATCTTAAACTGGAGTACCCCAATGGAGTTATCATACATGACACACGGAATCAAGGACGTATTCCGAATCACGTTATGTACCAAGCTGCATTGCAGCTGAATGGAGCAACTCGAAGCTATCAAAGTACACAAGGGAAACACACAGCTAACGATTACATTGAAGTGGTGTCTGGTCCAGCAAAACGAGAGGAACCGCCTCCGTACCACAGCCATAGCCCCTCTTCGACGATTAATCCCAGCAGCAAGTCGACGGTTCTCTAG

Transcript

amic_s0122.g2.t2

GTAGGAAAGGAAATTAGTTTGTTGCGAGGTTGTACAAGGATGGAACGAAGCCAGTACTTGGCGGTGATCTCTGGGGCGAGATTTGAGTCATGATTTGAAGTTTGCTGAGGCGAAAATGTCATGGTTTGGCAAAAATGCGGTTTGGTTCTGTCATGTCTTGCTGTTGGACGAAAGTGAACATCCAGTTGAGATTCGAAAGAAAACTAATGGAGAGGAAGTGCTAGAGAAAGTTTTTCAGCATCTCAACCTTTTGGAAAGGGACTACTTTGGACTTCGCTACATTGACAGGGATAGTCAATCGAGATGGCTAGATCCTTTGAAGCCTGTGGTAAAACAGCTGAAAGCTGGTCCTCCGTACTTGTTGTACTTTTGTGTCAAGTTTTATGCTGCTGACCCTTGTAGATTACATGAGGAACTAACAAGGTATTTGTTCTTCTTACAAGTGAAGAAAGACATATACCAAGGAAGGTTACCTTGTGCAACAAATGTCCTTGCTGAACTCTCTTCATACAGCATTCAGTGTGAGTCAATACTGTATTGTTCTGACTTGAATTTGTCTTCTCTGTTTTCGTCAGTTCCACCACCATTGCAACTATCATTATCCTCATCATCACTCTGTTTGTTATCGCCCatgtccggaaatgcacttaattagatCTGAGCTGGGAGAGTATGATCCCAAGGAACATACTCAGGGTTATGTGTCGGAATTCAGGTTTATTCCCAACCAGAGTGAAGAACTGGAAGCCAAAGTTGGCCACATGCACAAGAAGCTTGGCTGAGCTGGGAGAGTATGATCCCAAGGAACATACTCAGGGTTATGTGTCGGAATTCAGGTTTATTCCCAACCAGAGTGAAGAACTGGAAGCCAAAGTTGGCCACATGCACAAGAAGCTTGGACAAATGGTACCATCAGTGGCAGAGTTTATGTATCTCGACAAAGTCAAGTGGTTGGAAATGTATGGAGTTGATCTACATCCAGCTAAGGGGGATGATTTTGTGGAGTATTTTGTGGCCCTTAAGCCATCTGGGTTAGCGGTTTACAGGAACAAGACTCGAGTGGGTTCTTATCTTTGGTCCAAAATAGAAAAAGTGGATTTCAAAGGCAAAAAGTTCTACCTAACTGTGAAAGGAAAAGAGGATAGAGAATCTACCTTCAAATTTTATCTCCCAACCAACTCTGCTTGTAAGCATCTGTGGAAATGTTGTCTTGAGCACCACATATTTTTCAGACTGGATAAATCCAAAACTGTTCCTCGTCGTCGAAAAAGTATCCTTTTCCGCACCAGCTCATCTTACAGATACAGTGGGAGAACCCAAAAAGAGGCTTTAGAAGATGGAAAAAAGATTAAACGTTCTGACCCAGAAGTTTCAAGAAAACTCAGCAAACGCTATGAAAGGAGATCAAGTAGTGTATCTGGAGAAAAAGCTGTAAGTAGTGTTACAATCACTGCGACCAGTACATCACAAGTTCAGATACGACGTTTCAGCGAAACGGAAAAGCAAGGAGACTCTACAACCGTGCCTGTACAAAGTCCAAATGGAACTGTAACCAAGACGGACGGTGACCCAAGTTCCAGAAATGGCGCGAACACCGCAGTAGATGGCAGTGACAATCCGGGCCCTGCGTTGCCATGGGAACAATCTGCTCAATTGCAGGGCGGCTTGTACACGCCAGCCCCAGACTCACCTCATTCCATGAAAAGCACAGGGTCTGGTAGAGTCAAGAGATCCCCTAAGTTTCCAAGCCCGCATCGCCGATCAGCACCTAGCAGCGGCAGTGAAACAGACACACCTAGAAGAAGAGGTCGCAAAGCTTACTCTTCCGATGATGACACTGGCAGAAGACGACGACGAAGATGTCGTCATCATCACCGAGGACACCATTCCGCCGAGTCAGGGAGTGATCGTGACTCATCTTACAGTAGAGACGAACGCAGGCGCAACAGATCGTCAAAAGACATGGAAGAGTTTCTTAAGATGTCAGACGCAGCGCCGTATTTCTGGAATGAAAACACAAACAGGAAAGAACGAGGAAGTGGCTCAGAAGGGTCGcatcatcatcatcatcatcatcatcGGCACAGGCATCGTGAAGCCGATGCCAGAAGCGATGGTTCAGCATCGAAACTCAGGCACAGTAAAGCCGCCAGTGAAGACGCCGAATCGGGAATGGTTCCAGCGCTGGACGTAATTCACTCGAGAGTATCTGTTGCTCGAGTCAAGGACGGAAGTGGCGGCAGGCACCGGCATCATCGCCATCACCGTCATAGTTACCTTGGTTACCAATCCAGTGAATCTGGGTACTCCGCTATGTCTGCGCCCACTGCACCTAAGAGCTCTCAGGTGTTGTTAGAGTTAGGCCCAGAATCGGTGTCCACACAAAGACATGTCCCGCTTTCATCGCAAGCAAGCCCCAGGATGACTGCGAACCCCCATTCTCAATCCAGACCGGGGAGGGGAGGCTCATTGCCGAGAGAGGGAAGCCCCGATAAAGCCAGTCAATATCTTAAACTGGAGTACCCCAATGGAGTTATCATACATGACACACGGAATCAAGGACGTATTCCGAATCACGTTATGTACCAAGCTGCATTGCAGCTGAATGGAGCAACTCGAAGCTATCAAAGTACACAAGGGAAACACACAGCTAACGATTACATTGAAGTGGTGTCTGGTCCAGCAAAACGAGAGGAACCGCCTCCGTACCACAGCCATAGCCCCTCTTCGACGATTAATCCCAGCAGCAAGTCGACGGTTCTCTAGCAAGCTGTTGTTGTGGCAGAGACAATTCAAAAGGTATCAATGGGAGAGGAAAGCACAACGTCCTTTCACTCAGACAGAGAGGAATGAAACCAAGGACGTTGTGATTGGCGGTTTTAGATCAAGGGTTGACTTGCAAGTTCCAAGTTCACTTTGGGGTAGGGGAGGGTTGCTGAATGCGTAAGTGCACATCCGTTTCTTTTTTGTAATTTTTACTCTTGATTGGAATCAATAGTCCTGTTTTTGGGACACTCGAACACAAGCTTGATTACAAGAAACATGAAAAGAGGTACTTTGATTTGTAGTTTTTCGTTTGTTTTCAATTATTTAATTAACATTACAATAATGCACGATTTTTCTTTAGCCAGAAGTCGTGTGTTTAATGTTGCATATAACCATCAAAGAGCAGCTTTTTTTTTAGTAAAGTTGGATTGTGCCACTTCTCCTTTTTGAGTTTTTACCAATTTGTAAATAGGAAGATTGATGCAATATTTTGACTTTGGCTTGCTAGATTGAGATTTTACCACTTAATTGGTGTTTTTGACCGCCTAGTTAAACTTCTCTCCATGTTGGAAGTTTGCGGCAAACAACGAACTGCATCGGTCGAGGAAAATAATATTCCAGTTATTTTCATTCTTGAATAATTTGAAGCTCATCCATTTGCCATCGTTTTTAATGGTGGAAAATTTCCTTCGTGAGGAATAAAAGTATATTTTTGAAGAATGTACGTAAAACTATTTGATCACTAACATTGATGAAGCCCTTTTATTTTTTGTATACATACATAAATAGCAATAGAGACGAATACCATGTCTGTACCAGACGATTGGTTAGCTAAAAATTATGCTTTCTTGTGATAGACAGGTGTCGTGGCTCTTCAAAATGCGCATTTCTGTCGAGATTTCAGAAAAGCCTCAGGCCCAGGGTCGCACCGTCTACGCATGCGTCAAGGGAAATAAAGCCCATAAGTACGGGTTGAATCAGAAATGTTTCGATGTAAAGGTGAAACGCTAACCCCGCTGCAACTTTTTGTCGTTCATTATAATTATTTGAAATCATTTTCTTGACGTCAACAGAGCCAATTTTAAACTTGAAGAGAACAATTCTCCAAAATTAGAGCATGAAAATTGCTTCTTGCCGTTATCCTTGAACCCAATTTTTGTACTAGCAAGGAGGCGCAAAGCATCGTGGGATTTTAAAACTATTTCCAGATTCCCACGGCCGTGATGCCACTCATTTGTGTACGTCTGCCCACAATAACTGGTATCCTATACATTTGCTTTGGGCTGGAGGTAAAAAGTCTGTTCTAGGAAAATGTTGCGGTTTGATATCTTAAGAGGAGTGATATTATATGGCTAGGTACTATTTTGTGAAGTTTGACATTATACAAAAATAATTCGCACGATTTATTCCTCTTATTTAAAGACAATTTTTATGCGAACATGAAAGACGCAGGATTTTACTGTCGGAATCCTTCAACATTAGCCATAATTTCACTCCCCTTCCGATATTTTTAAAAACGTTTTTCACGATGTATGCTGAATATACTGCTGTAAGACATACTGTTAACTATGCTAATTCACTACGTTGCGGTCAAGGCATATTTTTGTATCGGTTATTTTATTTCCAAAGCTTTAGACAATTTGAGGCGAAAAATCTTAATATTTATACTTGTTTGGTGGTTGTAAATTGCAAATGAAACGAGGTAATAAAGTGTGATTTTATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57457	Band 4.1-like protein 4 OS=Danio rerio OX=7955 GN=epb41l4a PE=2 SV=1
Q9HCS5	Band 4.1-like protein 4A OS=Homo sapiens OX=9606 GN=EPB41L4A PE=1 SV=2
P52963	Band 4.1-like protein 4A OS=Mus musculus OX=10090 GN=Epb41l4a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000653 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF08736 all species →	FA	FERM adjacent (FA)	Family	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR014847 all species →	Domain	FERM adjacent	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23280 all species →	4.1 G PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23962	EPB41L4A, NBL4; band 4.1-like protein 4A	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.