Gene detail

Detailed information of amic_s0122.g43.t1 in Acropora microphthalma

Genomic Location: sc0000122_pilon:656797...675874
NR annotation: XP_044164545.1, poly(A) RNA polymerase GLD2-B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0122.g43.t1

CAGCGTCCATTTGAAAGAAGCCATGAGAGTCGGCTTTTTAAATTGTATGGTTGTGAATTATTTCGCACAGTAAGATTTCTTCCTAGCAAATCTCATTAAGAATGTGAAGAAGACTATGGCTTTTAGAAATAGATATGGACGAACGCGTTATTATGGCAGCAAGCCTTCTGTCAACAACTGCATTCCTGTTATCAGTGATCTTAATAGTTATGTTTCCAAGCCTCGCGATATTAAGAATTCATTTCCACATGCAAGACCACAACATAACTTGGCAACTTCAACTTCTGTGGATAAGGTGGATGTTATAGACTTAACAGGGAACTCAGTCCCTGACAAACCTGTGGCAACAACCTCTGCTAAACCTATGCGGCTGGACATGTCAAAAACAGTTGATTTTCGTGAGCAAAGAACTCTGAGTTCTAGCACTGTGGAAGTGCTGTACAATGCTGGAGAACAAAAACGGCCTGCTAAGCGGCGCCATCACTCTTCCGTTACACCAGGATCTCAAGATGATGTCCCTGTCGAACACAAGAGGGCTCGGCCAAGCTTTTCCAATCCTGCAACAGTTATACCCAGGAATTTCAGATTTAACTCTTATGATGCCCCGCCACCTGTCTTTACTCTTAATACTCTCTCTGTAGAAATACAGGAGGAGTGTCAAAAGATTGTTCAAACCAAAGAAACATTGGACAAAAAATTGAAATTAAAGGATTGTCTAGAAAACTTGTTTTCAAAAAGTTTTCCAGGTGGCTCGCTTCATCTGACAGGCTCATCAAGAAATGGATTTGGCAGTGAAGGCAGTGATGCCGACTTCTGCTTTGTTTTAAGTTCATCAAGTCAGTCACACAACAGGATTGAATCTTTGACAGTTTTGCGGAGGATGCAAAGGGTAATATCAAAGGACCATTATTTTCAGTTTCTCAACAAATGTACCGTTGTACCCGCCTCTGTTCCAATTATAAAATTTGTGGACACTATAAGTGGCTGTGAATGCGATATTAACGTCAACAACACTGTGGGTGTAAGGAATACTCATTTGCTGCGAGCGTATTGTGGAGTTGACTCTCGCGTTCGACCTCTGGTCGTAGTGGTAAAGAAGTGGGCCAAAACACAGGGTATTAATGATGCAAGCCAAGGAACATTGTCCAGTTATGCTTTAACGTTGATGGTCATCCACTATTTGCAAGCTGTTTGCATTCCTGCTGTAGTTCCTGTTTTGCAGAGAACACATCCAAAATTATTCAATTTTGGTGGCAGTATGTCAGAGCTCTCCCAACAGGATCCATGTAAAGATATCGCCTGTAACCAGTCAGAAAACAAGCAATCTTTAGGAGAATTATTTGTGGGATTTTTCAAATACTATGCTGAGGGATATAGATGGAATGACTATTACATTTCGGTCGCGATGGGTTTCGCATTACCTAAAACTGGTGGACATTGGCAAAGGAAACACATAACTATAGAAGAACCTTTTGACGGAAACAATGTTGCTAAAGCCGTTTGTTCGCTTGATGCGTTTAACACAATCCAAAGGAAATTCCGACTGGCATGGCATACACTCAAAATTTCGCCAAGTCTTGAAAGCATCAAAGTCAGATAAGCACTCCAGCTTTCCCTCAGAGGACGAATTGTAAATAGACTGCATCGTTTGTGCTTCAAGAGAACCCAAGTGCGACAGAGGCTCCTGCTGTTAACATACGTGAAATTTGAATAGATGTATGAAATTTTGAGCCTATAAACAATGAAACTGGTGTTTACGTTGAAAGAATTCTACTGTCTCCAATATTGAATAGATGTGCGACACACTGGCCCATCGTCAAAGAAATGGCAACTCGATGGTGTCTTCACTTCTTTTAAGCCAGCCATAAGAAATAGGAAAATAAGATAGCGAGTGTCCTCCGTCAAAACGTCCTGCATAACGGCTCGGCGCTTTCAAGTTGCATTTTACAAGAACGAGGTTCGTCTTCAACGGTTTGTTTTATCTGAATTTGGAATGCAATGCCTCGCTCGTTCAAGTGTTGGCTGTTAATGCTTTCTGAAAAAGCGAACTTTTAATGGAGAGACTCCGAGCACTCAACATCCGTTTTAGAACTACGCTCTTTTCAACGCATTCGATTGTATCAGAGTTTGGAACATAAGCTTCTGTTTCTTTCCCAATCTAAAAGCAAGAGTCGCTTTCTTAGAAGATAGTAAGTGTTCTCCCGTGGGACTGGGACCGTTTTGCTATGGGGACTCATCAGTCCTGGGGACATACTGAACTACTGGCCCGATTCCCTGGTAGATCCACTGGGCCCCCGCAACAGAATATTGTGGAGTGCGTTCTTCTATTCTGAAATTGACTTGATCAGGAATTGTAAAGCACATTTATTGATGTTGAATTTATATTATTAGAACTGTTCTGGAATATTTTATAAATAAAGTATACATATTTATGTGAGAAAATAGAGCGGAAAGTTTTCTTTTGCTTCATCATTAATACCGATTTCATAAGCAGCGCCGTCTTTAAAACTTCCTAGTCGAAATATGTACCATATTGTTGTTCGCGTGTTTGTTTATTTGTTACTTTCTGTGAGGGGCGAAAAACTCATGTGGGAGGTGCACTATTTCACAGCCAGTTGAAATCGTTATTGTTAATTCGTGCCCGATGTGAACTTAATTTCGCACAGCCATGAGGATCTGGGAATAGTTCCAAAACCCTATAATACACGAAGCCTCGACTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFA8	Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis OX=8355 GN=tent2-b PE=1 SV=1
Q6PIY7	Poly(A) RNA polymerase GLD2 OS=Homo sapiens OX=9606 GN=TENT2 PE=1 SV=1
Q2HJ44	Poly(A) RNA polymerase GLD2 OS=Bos taurus OX=9913 GN=TENT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001333 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01909 all species →	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF03828 all species →	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002934 all species →	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR002058 all species →	Domain	PAP/25A-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271 all species →	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0004652 all species →	Molecular Function	obsolete polynucleotide adenylyltransferase activity	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14079	PAPD4, GLD2; poly(A) RNA polymerase GLD2	EC:2.7.7.19	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.