Gene detail

Detailed information of amic_s0123.g15.t1 in Acropora microphthalma

Genomic Location: sc0000123_pilon:190132...206645
NR annotation: XP_029206676.1, dynein assembly factor with WDR repeat domains 1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0123.g15.t1

GTATCTCGGTCATGAAGATTTGAGCAATGGCATTCTGAAACAAGTCAGGAGAAGCGATCGGGGAAATGCGCCTAAAAAAGTTCTTACTGCGCTATTATCCACCAGGAATAATTTTGGAGTATGAGCAGTCTGGATTATTGAAGTCTAAGTCCATAGATTTGTTGGACTTAAAACCGACAACAGATGTGGATGCACTACTTGATGATATTGTTGCCAAGGAACCCTTAATCACTCCTTCCAAAATGGAACAAGTGCGAAAGTTGATCATCAGATTGCAGGAAAAGCTCGCTGAAAGTGCAGATCACCACTTCTACCTTTTCAAGGTTTTGAGAGCACACATTCTTCCACTGACCAATGTAGCTTTCAACAAATCTGGCACAAGTTTTATAACAGGAAGCTATGACAGAACATGCAAAGTCTGGGACACTGCGTCAGGGGAAGAGCTTCAAGTTCTTGAAGGACACAAAAACGTGGTGTATGCCATAGCATTTAACAATCCATATGGTGACAAAATTGCCACTGGCTCATTTGACAAGACATGCAAGTTATGGAGTGCTGATACCGGGAAGTGTTATCACACCTACAGAGGTCATACAGCAGAAATTGTGTGTGTAGCATTTAATCCACAAAGTACTATAGTGGCAACTGGAAGTATGGATACAACAGCAAAGTTGTGGGACGTGCAAAAAGGAGCGGAGGTTTCCACATTATCAGGTCATTCTGCAGAGATTATATCTTGTTCATTCAACACAACTGGTGATCAACTACTGACTGGCTCATTTGATCACACTGTGAGTGTGTGGGACACAAGAACAGGCAGGCGGGTTCACACTCTTATTGGCCACCGAGGGGAAATCTCCAACGCGCAATTTAACTTTGATAGTTCGTTTATAGTTACCGGATCAATGGACAAGACATGCAAAATATGGGATTCAAGAACAGGACAGTGCATTGGCACCCTAAGTGGTCATGATGACGAAGTTCTGGATGTATGCTTTGATTACACTGGCCAGTATATCGCCACAGCATCTGCGGATGGTACCGGTCGGGTATACAACGCTTTAACACATCACTGTATGAGTAAATTAGAGGGTCATGAAGGAGAAATATCAAAGATAACATTTAGTCCTCAGGGCCGGAGATGCCTGACAGCAAGCAGTGATAAGACAGCTAGGCTTTGGGATCCTTTTTCAGGAAAATGCATGCAGGTACTTGAAGGTCACACGGATGAAATTTTTAGCTGTGCATTTAACTACGAGGGAAACATCGTTATCACAGGAAGCAAAGACAATACCTGCCGTCTTTGGAGATGAAAGAAAGCAAAATGTAGATTAAAAGATAAGAGGCTTAGGAAAAATTGCTTTAGCAAAGATCAGTTTCTAAAAGCTAATTACCTTATTGTTCACTGTGTCATATATGAGTGTGAAATTGTTTATATTGTAATAAAATAACCTGTGCATTCACAGCAACAACCAGTTAATCGTTGTATCGTGAGAGCCTTGGTTCGTCTTTGATTTAAGTCAATCTGTTGTACGATTTGTGTCACTGAAAAATTTCCTGAAACCAATCGGAAGCACTAGAGCTTTCCTCCCTACTCTTCTGAATAACTTTGTGGATAAATCCTTTAGTTATGTTTGGGTACAAATAGGATTAAAAAAAAAATGGCGAGAAAATGAAGTCGCCAACCTGGCAACCCTCCTCAACATTTTAATTATCAGTAAAATTGTTTTACTCCCCATGGTAAAGAAAGCGTTGCGGTTTGAATCCCCATGTTCATCCTCGACTTCACAATATTTTTTGAATGATGAAAAATTCCGTCAAAAAAGACCCCATAAATTAATATAATTAACAGGCACATTCAACATCCTGTAATTAAGATGTGCATGCATATTGTGCCTTCTCTTGTGTGCTGAGTCATTAAATAAATTAGCATAATGGCATGTGACATATCAGTCTGATGTAATAGGTGAAGATAATTACCTCTCGAGAAGAAAATAAAAACAAATTCACAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2Y2	Dynein assembly factor with WD repeat domains 1 OS=Xenopus tropicalis OX=8364 GN=daw1 PE=2 SV=1
Q4R8E7	Dynein assembly factor with WD repeat domains 1 OS=Macaca fascicularis OX=9541 GN=DAW1 PE=2 SV=1
D3Z7A5	Dynein assembly factor with WD repeat domains 1 OS=Mus musculus OX=10090 GN=Daw1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005818 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19760	DAW1; dynein assembly factor with WDR repeat domains 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.