Gene detail

Detailed information of amic_s0125.g48.t1 in Acropora microphthalma

Genomic Location: sc0000125_pilon:837672...861083
NR annotation: XP_020611343.1, arachidonate 5-lipoxygenase-like [Orbicella faveolata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0125.g48.t1

ATGACACGTATGTTTACACTACTTTCGTTCATCGGAACCTTTTTAGCATCAACCAGGAATGCATCTGCAACCCAGTGTACAGTATCTCTACCCCAAAAGTCCACTCCAGTTTGCAAGGCGGTGAGAGACAAAGAATTAGCCGTGAAAAGGGGCATCTTCACGCTAAAAGAGAACCCTCAGTTGGATGGGTACGCAATGCTGAATATGACTCCCCAAGAATTCGTAGCCGTGTCTCAGCAAGACACTTTCACCAGATATTTCATCGCAGCTTTCTTCCAGATGTCCACCGCAAGCGAGAATACCGCTAAAGCCTACAACAGTTTGACCGCCGGACAGGAGATCGCCAACATATCAGAGTATCTGCAATTATCAACATTTTTTGAATCAGCGATGGAGCAAGCCATTGGAGAATACGGCAGACTTCCTTCGAGGTACGAGGCTTTCAACAACAATAAACCTGAGTGGATAAGTGACAAGTTATTCACTCAACAGCGGCTGGCCGGAACCAACCCAATGTCAATCCGCCGGGTTACAATCCAAGAGAGAAGATGCACGGTGAAGACAACTGATGGAAAATGGTGCCATTTTCCCTTTTTCGTCTTTGGAAAAAAATATGACCAGTGTATTGGTCGGATTCCATGGTGTTCAACAACAAGAGTGTACAGAGGCTGGCGACGATTCTGTAAAGTGAACAATGATACAACCAAAGGTACTGATGACTGCACAGTTCAGACTGTGATAGGTGAATGGTGCCATTTTCCTTTCACCTACAAGGGAAAGGTTTACAAAGGCTGTACTGATGTTGACCATAATAGGCCTTGGTGTTCAACAACAAAAAATTATGATCAAGATGGCTTTTGGGGAAACTGTGCCACCCGAACCTTTGAAGAGAACAAAATAGAAGGGTTGGACTGGAACGAATTGAAGGCCGTTCTGGATCCTTTGTTTGACTGGGAAGCCGCTGTTCAGGCAACGCTGCGAACTGCTGTTTCTTTGAAAAAGGCCATAAAAGAGGGACTCGTGTATGCTCTCCGCTACGAGCTGTGCGATGACATGCTCAGAATAGCGGACCTCACAGATACGGATCCCAGAAGGACCATGTGGAACTTTCTTTCTCCCATAGCTCTATTTGCCTCTGCCAAAGTTGCCGGGAAAGGACAGAATGAACTCGTTCCTGTTGCCATCCAGATGGACTCTAAACCAGGGTCAAAAGTGTATACTCCAAACGATGGGGACAACTGGCTGATTGCAAAGCTGAACGTACAAATCACTGATCTCGGGTATTCTCAAATCGTGGAACACCTCTCCAAGGTTCATTTTCTTATGGAGCCCTTCTGCGTCAGCTTAAAACGAACTTTGCCAGGTTTGCACCCTCTGAATCAGATCCTCAAGTATCACTGCCGAGAGATAAGCCTTCCAAACGTCTTAGTTCCTCCAAGCCTGTTCGGCCAAGGAACCTTTCTGGATTTACTCTTTGCTAATGGAAACGCAGGCAGTCAGAGACTTGTTGGTGATGCACATAAATTTGTCACATGGGAAGTGACAGATCTGAGGGAACAGATTGAGAAACGTGGACTTGCAGATAAGAGGCTGGTTCCTTACTTTCCGTACCGCGATGACAGTGAGAAAATCGTGAAAATTATTGAAAGAATGGCTACAAGCTACGTAAAATTATATTATAAAAGCAACAAAGACGTGGAAGAAGACAGCGAGCTTCAGGCATTTGCCAATGAGGTGTCGGCAAACGGAACCGGACCAACGGGAGGCATTGGAAAGATTGAAGGATTTCCTGCCAGCATTAAATCCAAGGAAGAGCTCGTTGATATTCTGAGCCGTATTATTTCACAACTGAGCGTCCAACACGCAGCTGTCAATTATGAGTTGATAGATTATGTCACGTATGCCCCTAACCTACCAACCAAACTGTACAATGATACCAGAGTAAATGAAGGAGAATTTTCGTTTCTCCGTCTGCCAAACAGACTCACTTCTTCG

Transcript

amic_s0125.g48.t1

TACTCGAGGTATGAAATCGCACAAGATCATTAACCAGTGATTTCAACCAAGGCATGCACATCGTTTTCAAGAAATTTAAATCAGTGAGATAACATATTTGGCTATCTGAGAAAAACTGAGGAAGTTCCATCGAAGATCTTATCCATCGACAGTGAGCAGTCAACGTAATGACACGTATGTTTACACTACTTTCGTTCATCGGAACCTTTTTAGCATCAACCAGGAATGCATCTGCAACCCAGTGTACAGTATCTCTACCCCAAAAGTCCACTCCAGTTTGCAAGGCGGTGAGAGACAAAGAATTAGCCGTGAAAAGGGGCATCTTCACGCTAAAAGAGAACCCTCAGTTGGATGGGTACGCAATGCTGAATATGACTCCCCAAGAATTCGTAGCCGTGTCTCAGCAAGACACTTTCACCAGATATTTCATCGCAGCTTTCTTCCAGATGTCCACCGCAAGCGAGAATACCGCTAAAGCCTACAACAGTTTGACCGCCGGACAGGAGATCGCCAACATATCAGAGTATCTGCAATTATCAACATTTTTTGAATCAGCGATGGAGCAAGCCATTGGAGAATACGGCAGACTTCCTTCGAGGTACGAGGCTTTCAACAACAATAAACCTGAGTGGATAAGTGACAAGTTATTCACTCAACAGCGGCTGGCCGGAACCAACCCAATGTCAATCCGCCGGGTTACAATCCAAGAGAGAAGATGCACGGTGAAGACAACTGATGGAAAATGGTGCCATTTTCCCTTTTTCGTCTTTGGAAAAAAATATGACCAGTGTATTGGTCGGATTCCATGGTGTTCAACAACAAGAGTGTACAGAGGCTGGCGACGATTCTGTAAAGTGAACAATGATACAACCAAAGGTACTGATGACTGCACAGTTCAGACTGTGATAGGTGAATGGTGCCATTTTCCTTTCACCTACAAGGGAAAGGTTTACAAAGGCTGTACTGATGTTGACCATAATAGGCCTTGGTGTTCAACAACAAAAAATTATGATCAAGATGGCTTTTGGGGAAACTGTGCCACCCGAACCTTTGAAGAGAACAAAATAGAAGGGTTGGACTGGAACGAATTGAAGGCCGTTCTGGATCCTTTGTTTGACTGGGAAGCCGCTGTTCAGGCAACGCTGCGAACTGCTGTTTCTTTGAAAAAGGCCATAAAAGAGGGACTCGTGTATGCTCTCCGCTACGAGCTGTGCGATGACATGCTCAGAATAGCGGACCTCACAGATACGGATCCCAGAAGGACCATGTGGAACTTTCTTTCTCCCATAGCTCTATTTGCCTCTGCCAAAGTTGCCGGGAAAGGACAGAATGAACTCGTTCCTGTTGCCATCCAGATGGACTCTAAACCAGGGTCAAAAGTGTATACTCCAAACGATGGGGACAACTGGCTGATTGCAAAGCTGAACGTACAAATCACTGATCTCGGGTATTCTCAAATCGTGGAACACCTCTCCAAGGTTCATTTTCTTATGGAGCCCTTCTGCGTCAGCTTAAAACGAACTTTGCCAGGTTTGCACCCTCTGAATCAGATCCTCAAGTATCACTGCCGAGAGATAAGCCTTCCAAACGTCTTAGTTCCTCCAAGCCTGTTCGGCCAAGGAACCTTTCTGGATTTACTCTTTGCTAATGGAAACGCAGGCAGTCAGAGACTTGTTGGTGATGCACATAAATTTGTCACATGGGAAGTGACAGATCTGAGGGAACAGATTGAGAAACGTGGACTTGCAGATAAGAGGCTGGTTCCTTACTTTCCGTACCGCGATGACAGTGAGAAAATCGTGAAAATTATTGAAAGAATGGCTACAAGCTACGTAAAATTATATTATAAAAGCAACAAAGACGTGGAAGAAGACAGCGAGCTTCAGGCATTTGCCAATGAGGTGTCGGCAAACGGAACCGGACCAACGGGAGGCATTGGAAAGATTGAAGGATTTCCTGCCAGCATTAAATCCAAGGAAGAGCTCGTTGATATTCTGAGCCGTATTATTTCACAACTGAGCGTCCAACACGCAGCTGTCAATTATGAGTTGATAGATTATGTCACGTATGCCCCTAACCTACCAACCAAACTGTACAATGATACCAGAGTAAATGAAGGAGAATTTTCGTTTCTCCGTCTGCCAAACAGACTCACTTCTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZQF9	Polyunsaturated fatty acid (12S)/(13S)-lipoxygenase, epidermal-type OS=Rattus norvegicus OX=10116 GN=Alox12e PE=3 SV=1
P14856	Seed linoleate 9S-lipoxygenase-2 OS=Pisum sativum OX=3888 GN=LOX1.2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000306 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0125.g48.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.