Gene detail

Detailed information of amic_s0127.g114.t2 in Acropora microphthalma

Genomic Location: sc0000127_pilon:1275127...1290390
NR annotation: XP_044181733.1, 17-beta-hydroxysteroid dehydrogenase 13-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0127.g114.t2

GAATATTATTTGTGGAACAGACGAACGACTTACCTCATACTAAGCCATATTGAGGAAATGAACAAGCCAGGTACGACAAGCTCGTTTTCTGGAATCCATTGCAGTTCTACTGTTGATATTTTACGAGAAGCTCTGAAATGTCCGAGGGAACTGTAGAGTAACCTGCCACCATCTTTTACATCTGGCTCTGACAGCCCTGCGGAAGAGAAGAGAAAGTTGTTTTCTTGTGTGACAGCTGCGTGATAGGCGGCCCTTCGGAAGAAGTTAGCCAGGGGTTTTGTTACCAAAATCTGCAGGGTTATCGAGAAAAGAAGACAGTCGTGGAGAGTTTTTCCCCTCCGATCTGCAATTATGTGGCTGATTTTCGAGATATTTGTGGTACTTTTCAAAATGTATTATTTTTGGCTTGAATCCGTCTTTCGTTGGATCGTGCGACCACCGAAAAAGAACGTACATTGACGGGCAAATCGTACTAATAACAGGTGCTGGTGGTGGAATTGGCAGGGAACTGTCACTTGAGTTTGCAGCTCATGGGGCAATTCTTGTGCTGTGGGACATCAATAAAGATTCAAACGAAGAAACGGCAAATAAAGTACGATCCAGGGGAGGCAAGGCTCATACCTATGTTTGTGACTGTAGTAGTCGAGAAGATGTGTATCGTGTGTCTGCACAGGGAGCTTCGTGAAATGGGAAAAACTGAAATAAAAATGACATGTGTTCAACCATATAAAGTCAATACTGGGCTTGTATGGCATCCCAAGCCACGGTTTCCTTCTGTGTTGTCTCCTTTGGAACCAGATTTTGTTGCTAAAGAAGTGGTTGCTGGAACCTTAAGAGATGAGGAAAGCATCATTCTTCCTCGGACAGCTGTTGTTCGCTTTTTTCTAGATGCGGAACTGTCACTTGAGTTTGCGGCTCATGGGGCAATTCTTGTGCTGTGGGACATCAATAAAGATTCTAACGAAGAAACGGCAAATAAAGTACGATCCAGAGGAGGAGAGGCTCATACCTATGTTTGTGACTGTAGTAGTCGAGAAGATGTGTATCGTGTGTCTGCACAGGTACGCCGTGAAGTTGGCCATGTGGACATATTAGTCAACAATGCCGGAATCTTGTCAAAAGGGAAGATTTTGAAAAAAGAAGATGAAGAGATTGAAAGGACTGTGAAAATCAACACTTTGGCCCACTTTTGGACAATAAGGTCATTTCTTCCAAGCATGCTACAAAGAGACAAAGGCCACATTGTCACTATAACATCACTGTTAGGAAGTTTTGGGGCTGCTAACCTCACCGACTACTGTGCATCAAAATTTGGTGCAACTGGTTTAAACCATGCACTTGCTAGGTTTCCTTCTGTGTTGTCTCCTTTGGAACCAGATTTTGTTGCTAAAGAAGTGGTTGCTGGAACCTTAAGAGATGAGGAAAGCATTATTCTTCCTCGGACAGCTGCTGTTCGCTTTTTTCTAGATGCGCTACTTCCAAGGAAAGCAAACAATGTCTGGATAGACTTTCTGCAAACTGGGGTCGGTGAACACATCTCCAAAGAGGAAAAGAAATCCAAGTGATGAATTTGACTTTGGGGAAAACAAAATAAAGAAGGAAGGCTAATATTCTAAGAGGACTTGAAAACGAATACTGGATTTTTTTAGAGACAGAAGTACTAAGATAATAGTTTTTTATCATTGTAGTTTTCATTCAAGTCATTACAGCTTCTTTTTCTTTCCCAGAAAGTACTCCTGTCTACCATTTCACACCCACCCCCCAccacacacatacacaccaagatctaactcggcaataattgcactctcgaatattactgttagatttactcttgagtatttcccttctcattgagaattactagtTGTAGTTTTGTTCAAGTCATTGCAGCTCGGGGCGTTCTTTTTTTTTTCATCTGTTTACTTTAAACTTAACACCTTGTATCAGCATCTAGAAAAAAAATAACATTTTGATTATTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N3Y7	Epidermal retinol dehydrogenase 2 OS=Homo sapiens OX=9606 GN=SDR16C5 PE=1 SV=2
A5PJJ7	Short-chain dehydrogenase/reductase family 16C member 6 OS=Bos taurus OX=9913 GN=SDR16C6 PE=2 SV=1
Q7TQA3	Epidermal retinol dehydrogenase 2 OS=Mus musculus OX=10090 GN=Sdr16c5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24322 all species →	PKSB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0127.g114.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.