Gene detail

Detailed information of amic_s0127.g19.t1 in Acropora microphthalma

Genomic Location: sc0000127_pilon:180048...184245
NR annotation: XP_029179809.2, copper chaperone for superoxide dismutase-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU84	Copper chaperone for superoxide dismutase OS=Mus musculus OX=10090 GN=Ccs PE=1 SV=1
Q9JK72	Copper chaperone for superoxide dismutase OS=Rattus norvegicus OX=10116 GN=Ccs PE=1 SV=1
O14618	Copper chaperone for superoxide dismutase OS=Homo sapiens OX=9606 GN=CCS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00080 all species →	Sod_Cu	Copper/zinc superoxide dismutase (SODC)	Domain	Interproscan
PF00403 all species →	HMA	Heavy-metal-associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036163 all species →	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR006121 all species →	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR036423 all species →	Homologous_superfamily	Superoxide dismutase-like, copper/zinc binding domain superfamily	Interproscan
IPR001424 all species →	Domain	Superoxide dismutase, copper/zinc binding domain	Interproscan
IPR024134 all species →	Family	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10003 all species →	SUPEROXIDE DISMUTASE CU-ZN -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006801 all species →	Biological Process	superoxide metabolic process	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016532 all species →	Molecular Function	superoxide dismutase copper chaperone activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04569	CCS; copper chaperone for superoxide dismutase	-	Pathways of neurodegeneration - multiple diseases	ko05022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.