Gene detail

Detailed information of amic_s0127.g30.t1 in Acropora microphthalma

Genomic Location: sc0000127_pilon:321465...324985
NR annotation: XP_029206203.2, protein IMPACT-B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0127.g30.t1

caccagacgattttactcatcaatggggaaccccttagggtagaaagggttaacaTACACAAATCTCTGCTTTGTTTTTTTTTTTCATTTTATATACACCAGAGAAATATTTACAATGTAAGGAATATCGTCAAATCGTAACCATATAGGGGATTTAGGAGCTCTGTTAGCAACATCCACTATTTTTTATAACTCCAAGCCTTTGCATTCCATTCAAATACATGGTTGAATATTGAGGAAACAGCATTTTTTGTGTCTCACCAACTATTACATTATTGGCCACTATAGAAATGTCAGATCATGTTTCAAATTAGATTGGAATAAATCTCTCCATATCGGCATAGTTTATACTTATTTTAAATTTAGCAAGTGGTGTGTGATAATTATGTTGTTTTCTGTGCATGTATTCTTGATTCCAAAGTTTTAAGCCTCTGGGTTCGAACCATTGTCAGTATTATCATCACCACGAAGACAAGACCGTTTATAGCGACTGCATGCTAATCTTGATTTCCATTCCATTGAGTTCCATTGCTTTGACTAACAGCTCAAACACTGTTATTATCTGCTACCCAGATCCATGTCGAGGCATCGCAGCCCAGGCCCATGAGGAAAATCCACAAAGGGATAAACACCACGTAATACGAAGAAGTGATGATCTCCTGAAGTCTACAACAAAGTACAACGATGAAAGTAAGCTTAGAGGCTACCATAAACAAGAACCAAAATTTTCTGGCGATGCTGATTGGGTCGACTCCATCTTTGATATGTCGGCAGATTCGAAACAAAATGAAGAATATCACCACACAGTCAAAGATTAGAAAAGGAATGAAAATGATAAACCAGAACCAGTCCGTTTCCTTGTCGAGGCGGATGACAAGAAAAATGAGAAACAGAACAACTACGCTCCAAACTCCGACTCTGTAAAATGGACTATTCGCCATTTTGAAAGTTACAGGACAATTGTGTCATCTTACATAACAAGAATATTCCCCTTTTTAAGTACCGCTGTTAATGAGACACACGGAAGTGAAGCAATCATCAACAGCTGATGTAATTGATGCATCTGTTACTTGGTGGTTGCTTGATAAACTTGATGGAGAACATCACAGAACAGATCGAAGAAATAGAAGTTTTATCTGCTATTTACGGCCATGATTTCCAGGTAGTCGATGAGGCGAAGAGAATCTACAAAATCCACGTTCCTCATAGATATGATTCGTGGTGGTCTGTAACTCTGCGAGTAGTTTTACCTCCGGAATATCCATCAAAAACGCATCCTGTTTTTGAGATCCACTCTGCTTGGATGAGTGAAGCTGATGAGATCGAAATGTCGGATTTGCTGTACACAATTTCTCACGATCACCAAGGAGAAATTGTGCTGTATCAGTGGGTGGAAGCCTTGAGGACATTTATTGATAACAAAGTTGGAGATCAAGGAGGAGGCGAAGTTCCACCACCAAGCAGTCATTTAGGCAAGAAAGAGCACTTGTCTGTAACTTTTCCAGTCGATGTAAACAAATGTGATAATGAAGAATCTGCAATTTGTAACATTGCTTTGGAATCATTGACTGTGGTGGATCCAGAAGATAATGCATTCAAGCATCTTCAGGTTTCAGAATCAGAGGAAAAGCCTGAGATTATTCATGGCGAACCTTTCACAGACAGAAAAAGTACCTTTCAAGCTCACGTTGCACATGTCATAACTAAAGAACAAGTTAAACAAGTTGTGGAGGAACTAAGACAAAACAGGAAAATAAGCAATGCTGCTCATAACGTGATGGCTTATAGAATTTTTTGTGAGGACCGTAAATCTTTCCTCCAAGATTGTAATGATGATGGCGAAGCCTTGGCTGGCGGAAAGTTGCTTCATCTCTTGCAAATTGTTGAAGCAAGAAATGTTGTTGTTGTAGTGACACGATGGTTTGGAGGGACCTTGTTAGGTCCTGATCGATTCAAGCATTACAACAACTGTGCAAGGGATGTCATGAAAATGGCTGGGTTTGTGGACACTAGTAATCCTAATAATATGAAAGAATCAAAAAGCAAAAGTAGATTTAAGAGTGGCAAGAAACATTAACACCACAGTCATATTGTTGAAAGCTGTTTCATTGTCTCCTTTGCTGGTCTGGTTGTTCAGTGTTTGTGGCATAAGAAAGTAACAGTTATGATTATTAAGCACAAGAGTTGGGGGGTTGAATATGTAACACTCCATGCCCTTTGTAGTCACAAATAATAAAAAAACTTACACAGTGCTCCGAGTTGATGCAAAATCTTTTTATTATTTTTGCATTAATGCTGGTAATTAATGACTTACGGTCACCATCACCTGTCATTCTAATAAGCTCTTAAAAAGAATTTATTTGTAACTTAAGTTTATACAACACCTAAGTGGCTGTTTACTCTAAATACTACAACAACATTCATAATACACTTTAAATTTATTGCAACAGTACTTCAACTTCTACTTTAAAAGAAGATTGAATTTAATTTTATGAGCGAAACAGAAAAGGCAGAACAGTTTACAGATTGTGCATTCTCTAATATAACAATAGAGTTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q642J4	Protein IMPACT OS=Danio rerio OX=7955 GN=impact PE=2 SV=1
A9UMG5	Protein IMPACT-B OS=Xenopus tropicalis OX=8364 GN=impact-B PE=2 SV=1
O55091	Protein IMPACT OS=Mus musculus OX=10090 GN=Impact PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005192 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan
PF01205 all species →	UPF0029	Uncharacterized protein family UPF0029	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR036956 all species →	Homologous_superfamily	Impact, N-terminal domain superfamily	Interproscan
IPR001498 all species →	Domain	Impact, N-terminal	Interproscan
IPR023582 all species →	Family	Impact family	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16301 all species →	IMPACT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006446 all species →	Biological Process	regulation of translational initiation	Interproscan
GO:0060733 all species →	Biological Process	GCN2-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0127.g30.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.