Gene detail

Detailed information of amic_s0127.g35.t1 in Acropora microphthalma

Genomic Location: sc0000127_pilon:344992...364495
NR annotation: XP_044181401.1, TBC1 domain family member 2B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0127.g35.t1

ATGGAAGAACCGTGGGAGTTGTTAACTGTCCCAGCAGAAATACAATCCTCCTCTTTTGGGAAAGAAACGTCCTCTGATTGTCCTGAGCATGAGAAATTATCAGAAAAAACTGAAGGGAATAACAAGTCTAAGCAAATTGCCAGTAGAACTACAAAGCTATGTGGATTTCTGAACAAACTTGGAGCCAAGGGGTTAAAAAGATGGAAGATGAGATGGTTTGTTTATGATGAAAGAAAATGCAGGCTGTATTATTACAGGACTCCTCAAGATGCGACACCTCTTGGAGTCATTGATGTGGCTAATGCTTCGTTCTCATTCGATGTGGTAGATGCTGAGACGCTTAACGAGTTTCACATTAACACACCTGAGCGAACATACCAACTTCAAGCAAAAGATAAACAAACAATGATGTTTTGGCTTCAAGAATTGCAGGGCAGACGACAAGAGTACAGTAAGAAAAAAGCCAACCTTGTTGTCCACAACAAAGGTGACATCTCGTTTCTTGGGCAATCTACAGATGGTTTATTAGCTgaagagaaagaaatagagaaagaaaAATCTCAAGAGGAACCCCCAAAGCCCATTATTGAGCCTGTTCCTGTCCCACATTCTGTTGGGGAAGAAGCTGCTGCAATAATGCCTCTATCACAAAGCTTTCTTTCAAACATTTCATACACAAACCTCAAGACAGAAATTAACAATATGAGAGCCAAAAGAGCATCATTGACCCCAATGAACATTTCTGGACCTTTGACAGAAAAAGAATTGGCAGAACTACTGAATCTGAAAGATGAAACAAAGAGCTCCAAAGTCCAGTCATCTCCAAATGGTAAAGATGTCCCTGTTAATGATGGAGGAAAGAGGACATTTCAGAGTCATATTGCAATTGTCAATGAAGAAGAAAGTGAAGAAACAAAGGCCTCAAACCCTCAACAACAAGAAAATGCAGAAGACAAAAAAAAAATCAGCGCCAATTTTCTGATGAGGAGCGCAACACTTCGTAGAAAGTTTGCCAACAGCCGGTCAGTAACTCATTCTGCGGCAGCTACAAAGATTCCACCTCAATGTGCGGAATGCAAAAAGCTTCAGGAATCTCTTGCTGAAACAGAACGTAAACTATCTGTAGCTCAAGATGAATCACAGATGCGTCAAGATGTCATTGAAAGTCTTCACCAAGTGTTCAGGAAATTTGAAGAGAGAGAGAATAATGTGAATTTAAAGGAGCAAGATGGAAAGAACTCATTTCCAGAAGAAATGAAAGACAAACTAATTTATATTGCACAGTTGGAAGAAAAAGTGAAAGAACAGACACAGGAGCTGGAAAGAGTAGATGCTGCCATGAAGGCCAATAACAAGGAGCTACGAGAATGCAGGGACCAAATTCAGATGTTTCAAGAGATGACCGCTGTTAAGGACCAAGTTGTAGTTTCACTTACCCATCAACTGTACGCACTTGAGAAATCCACTGTGGAGGGAGTAGAAGTTCATGAAGAAGCTGCAGACGACCAGGTGGACGATGATCATCAGCGAAGGGCTTCAAAGGAGACCAAGTCTGCAGAAAATTTTATTGAAGAGATGCAGGAGATTGGTAAACTGAAGGAAACATGCCAGGCATACGTGCTGCAAAACCGATTCCTCAATAGCGAAATACTGGAGTTCAACAAACTTCGAACCAACGATGCCTCGATTATCAGGGCACAGCAAATGAGACTCGCCACTGTTGAAGCAGAAATGTGTAAATATAAAAGCAAATACTTCCTTGTGCTGAGAGAATTCCAAAAGCCACGAAAAGACGGGGACTCCATTGGTATGGAGGATGACGTTATCAGTAGACTTGTTGAGGATGCTATTGACAGCGAATCACGTGAGATATTGACAATGTCAAGGTCAAGCATTCAGCCATTTGATCGTTGGGGCTTCAAACAAAATCTAGATGGCGACGACGAAGAAGCCTTCTACTCAGTGGCGCAGAAAATGGACCGAAGATCAGAACAGCTGAAGGCAAATTTAAGTACGCATGAGATGTCAGTGGAAGTCAAATGGGAAAACTATATGATCGCTCATAAGAACAGAGATTTCCAAAAAACGCCAGAGCTGAAAGCTTTGATTCGATCTGGGATCCCGGACGAGCATCGAGCCGATGTATGGAAACACTGCATCAACACATGGGTACAAGAAACGAGAAGAGAAATGGGAGATGGATATTACCAACAACTATTAGAGTCGACTGAGGGGAAACCCTCACCGGCGGTCAAACAGATCGAGTTGGATCTGTTACGCACGCTTCCAAATAACAAGCATTACGAAAAGATGGACTCTGATGGGATTGCTAAATTAAGAGATGTATTGCTGGCCTACAGTTGGCACAATCCCGACGTTGGCTACTGTCAGGGATTAAATCGCCTGGTTGCTATCGCTTTGCTGTATCTCACACAGGAAGAATCCTTTTGGTGTCTTGTGGCCATTGTTGAAATCCTTATGCCTAAGGATTATTATTCAAAGACGCTGATGGCATCACAAGCAGATCAAAGAGTACTGAGAGATCTGCTGGCTGAGAAATTGCCAAGACTCAGCGCCCATTTTGAATCACTCAATGTAGACTTATCGCTGGTGTCTTTCAACTGGTTTTTAACGGTGTTTGTCGATAACTTTCCCGTTGAGACTACGCTTCGAGTTTGGGACACGTTCCTTTTCGAAGGAAACAAGATTCTGTTCCGTTTTGCTTTGGCGGTCTTTAAAAACAGCGAAGAGCTGCTTCTTAAGTGCACAGATCACATGAGTGCATTTAATTTCCTGAGGCAAATGCCAGAGAAGATTACCGATTCAAATAGCTTGTGCCAGATTGCTTTCCAGCTTCTTAATCCGTTTCCCATGAAGATGATTCGGTCGAAGCGAGCGCATTACTTAGAAATTGTACAGGGAGAACTCGCAGAGCTGGACAAATTACGACAGAATTACGTCAGCAACAAGGCGGACGACCCTGAGGAGGGCGATGGAGAGCCGTTAGGCGAAGATTGA

Transcript

amic_s0127.g35.t1

ACTATTCCCAGTCAGCCTGGTTCAGGGCATTGTCAAGGTCTCTTCCGTATACATAGACCACAAAACATGGAAGAACCGTGGGAGTTGTTAACTGTCCCAGCAGAAATACAATCCTCCTCTTTTGGGAAAGAAACGTCCTCTGATTGTCCTGAGCATGAGAAATTATCAGAAAAAACTGAAGGGAATAACAAGTCTAAGCAAATTGCCAGTAGAACTACAAAGCTATGTGGATTTCTGAACAAACTTGGAGCCAAGGGGTTAAAAAGATGGAAGATGAGATGGTTTGTTTATGATGAAAGAAAATGCAGGCTGTATTATTACAGGACTCCTCAAGATGCGACACCTCTTGGAGTCATTGATGTGGCTAATGCTTCGTTCTCATTCGATGTGGTAGATGCTGAGACGCTTAACGAGTTTCACATTAACACACCTGAGCGAACATACCAACTTCAAGCAAAAGATAAACAAACAATGATGTTTTGGCTTCAAGAATTGCAGGGCAGACGACAAGAGTACAGTAAGAAAAAAGCCAACCTTGTTGTCCACAACAAAGGTGACATCTCGTTTCTTGGGCAATCTACAGATGGTTTATTAGCTgaagagaaagaaatagagaaagaaaAATCTCAAGAGGAACCCCCAAAGCCCATTATTGAGCCTGTTCCTGTCCCACATTCTGTTGGGGAAGAAGCTGCTGCAATAATGCCTCTATCACAAAGCTTTCTTTCAAACATTTCATACACAAACCTCAAGACAGAAATTAACAATATGAGAGCCAAAAGAGCATCATTGACCCCAATGAACATTTCTGGACCTTTGACAGAAAAAGAATTGGCAGAACTACTGAATCTGAAAGATGAAACAAAGAGCTCCAAAGTCCAGTCATCTCCAAATGGTAAAGATGTCCCTGTTAATGATGGAGGAAAGAGGACATTTCAGAGTCATATTGCAATTGTCAATGAAGAAGAAAGTGAAGAAACAAAGGCCTCAAACCCTCAACAACAAGAAAATGCAGAAGACAAAAAAAAAATCAGCGCCAATTTTCTGATGAGGAGCGCAACACTTCGTAGAAAGTTTGCCAACAGCCGGTCAGTAACTCATTCTGCGGCAGCTACAAAGATTCCACCTCAATGTGCGGAATGCAAAAAGCTTCAGGAATCTCTTGCTGAAACAGAACGTAAACTATCTGTAGCTCAAGATGAATCACAGATGCGTCAAGATGTCATTGAAAGTCTTCACCAAGTGTTCAGGAAATTTGAAGAGAGAGAGAATAATGTGAATTTAAAGGAGCAAGATGGAAAGAACTCATTTCCAGAAGAAATGAAAGACAAACTAATTTATATTGCACAGTTGGAAGAAAAAGTGAAAGAACAGACACAGGAGCTGGAAAGAGTAGATGCTGCCATGAAGGCCAATAACAAGGAGCTACGAGAATGCAGGGACCAAATTCAGATGTTTCAAGAGATGACCGCTGTTAAGGACCAAGTTGTAGTTTCACTTACCCATCAACTGTACGCACTTGAGAAATCCACTGTGGAGGGAGTAGAAGTTCATGAAGAAGCTGCAGACGACCAGGTGGACGATGATCATCAGCGAAGGGCTTCAAAGGAGACCAAGTCTGCAGAAAATTTTATTGAAGAGATGCAGGAGATTGGTAAACTGAAGGAAACATGCCAGGCATACGTGCTGCAAAACCGATTCCTCAATAGCGAAATACTGGAGTTCAACAAACTTCGAACCAACGATGCCTCGATTATCAGGGCACAGCAAATGAGACTCGCCACTGTTGAAGCAGAAATGTGTAAATATAAAAGCAAATACTTCCTTGTGCTGAGAGAATTCCAAAAGCCACGAAAAGACGGGGACTCCATTGGTATGGAGGATGACGTTATCAGTAGACTTGTTGAGGATGCTATTGACAGCGAATCACGTGAGATATTGACAATGTCAAGGTCAAGCATTCAGCCATTTGATCGTTGGGGCTTCAAACAAAATCTAGATGGCGACGACGAAGAAGCCTTCTACTCAGTGGCGCAGAAAATGGACCGAAGATCAGAACAGCTGAAGGCAAATTTAAGTACGCATGAGATGTCAGTGGAAGTCAAATGGGAAAACTATATGATCGCTCATAAGAACAGAGATTTCCAAAAAACGCCAGAGCTGAAAGCTTTGATTCGATCTGGGATCCCGGACGAGCATCGAGCCGATGTATGGAAACACTGCATCAACACATGGGTACAAGAAACGAGAAGAGAAATGGGAGATGGATATTACCAACAACTATTAGAGTCGACTGAGGGGAAACCCTCACCGGCGGTCAAACAGATCGAGTTGGATCTGTTACGCACGCTTCCAAATAACAAGCATTACGAAAAGATGGACTCTGATGGGATTGCTAAATTAAGAGATGTATTGCTGGCCTACAGTTGGCACAATCCCGACGTTGGCTACTGTCAGGGATTAAATCGCCTGGTTGCTATCGCTTTGCTGTATCTCACACAGGAAGAATCCTTTTGGTGTCTTGTGGCCATTGTTGAAATCCTTATGCCTAAGGATTATTATTCAAAGACGCTGATGGCATCACAAGCAGATCAAAGAGTACTGAGAGATCTGCTGGCTGAGAAATTGCCAAGACTCAGCGCCCATTTTGAATCACTCAATGTAGACTTATCGCTGGTGTCTTTCAACTGGTTTTTAACGGTGTTTGTCGATAACTTTCCCGTTGAGACTACGCTTCGAGTTTGGGACACGTTCCTTTTCGAAGGAAACAAGATTCTGTTCCGTTTTGCTTTGGCGGTCTTTAAAAACAGCGAAGAGCTGCTTCTTAAGTGCACAGATCACATGAGTGCATTTAATTTCCTGAGGCAAATGCCAGAGAAGATTACCGATTCAAATAGCTTGTGCCAGATTGCTTTCCAGCTTCTTAATCCGTTTCCCATGAAGATGATTCGGTCGAAGCGAGCGCATTACTTAGAAATTGTACAGGGAGAACTCGCAGAGCTGGACAAATTACGACAGAATTACGTCAGCAACAAGGCGGACGACCCTGAGGAGGGCGATGGAGAGCCGTTAGGCGAAGATTGAGAAAGAAAAAAATAAACCGCGGTTCTCCAGCAACAACCTGCCATGATTTTAGCGAAGCTCCTCAGCAGCTCCAGAGCTGTTTGGAAGCTCTTCGGGCAACAGAACTCCTTCTTACTCTTCAAGCTTGGAACTTTGTTTTTTTTTCTCTGTTTCTGTCTTTCTTTTTGAAAAAGAGACCCTGAGTTAGCGTATCCAAGCTTTGCTGTTTTAACCTTGAAAGTTGGTCCTTTGTCTTAAAAATGTTTTTTTTTTAAACCAAGTATACATCGTCATACCCAGTTGTAAATATAGCGTTTTTTAATAGTGAAGGTATGTAACAGACCAAATTTCATCCAGAGGTTACTCTTACTATCCttttttttattttttttttCAAAGAGATATTGTAGATAATGCAGAGTAAGCACACGTTCTTATGTTGATGGTTTACTTATTTCCCGCTAAGATTACTGACATTCAGAACATTCGTCTTTTCAATCAGTGAATCGTGTTTTCATTGTATTTGCCATTAGCCGCAAGGAGAGTTTCTTCTCTGCAGCTGCTTCGATTTTTCTCGCAGTGACAATATTATAGTGACATTTTGGCACAAAGTGTATTCGGAGATGATGCAAAAACTCAGTTTCCTTTAGTCTGTTGGCACTGAGGCTGTTTCGTTTAGTCTGTTGGTGATACAGACTGCCTAAGGGAACAAACTAAGTGTATGGTGTCTGTTATAACGCTTAACAAATTATTATATTTCGTTGTAAATAGCATAACATATCAACTATAAGAAATAGCCATTTTCGACGTTCTTGATTCCTCAACGATGTGTACTTTTTCTCTTCGCAGTGTTGGTGAATAAACCAAATTTTGATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U0J8	TBC1 domain family member 2B OS=Mus musculus OX=10090 GN=Tbc1d2b PE=1 SV=2
Q9UPU7	TBC1 domain family member 2B OS=Homo sapiens OX=9606 GN=TBC1D2B PE=1 SV=2
Q28CB1	TBC1 domain family member 2B OS=Xenopus tropicalis OX=8364 GN=tbc1d2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004129 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0127.g35.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20166	TBC1D2B; TBC1 domain family member 2B	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.