Gene detail

Detailed information of amic_s0128.g12.t1 in Acropora microphthalma

Genomic Location: sc0000128_pilon:120217...129495
NR annotation: XP_015776362.1, PREDICTED: condensin-2 complex subunit H2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0128.g12.t1

ATGTCACCTGAAATGGCGGGAAGTTTACTCTCTGTGAGTTTGTTTTGTTCGAGAACATGTCTTGGATGAGTTTTGGGTGAAATTTCTCCTCGAATCATGCCATCTCAAGCCAGTCGTAGTGATTCCAACGATCTTGCCTCCAAGTACAGCCATCTGTTGCAGCCTATCCGTGATCTAACAAAAAACTGGGACATAGATGTCGCTGCACAACTCGAGGAGTATTTGGCTGAGATTGAAAGGATTAAAATATCATTCGATGGAGGCAAAACTAGTATGAATTTTGCTGAAGCAGCCCTTGTCATTCAAGGCTCAGCTTGCATTTACAGCAAAAAGGTGGAGTATTTATACACATTGGTCTATCAGACTTTGGATCTGATAGCAAGTAAAAAGCGACTTCAGCAAGCTTCATCGGTTGATGAACAGGGTAAAGACAATGATGCTTCTTTCAAGGACAATAGTGAGGAGTTCCTACTTTTAGATGACATCAAAGAAGCTAAAAATATTGACTTAAAAGAAGATGAAGGCAACTTTCTCAAAGAGGGTTCACAAATCATTCCCAGAACTCCTCTTGTGTTGCTTCCTTTGGCGGAGAAAGATAAAGAGGATGCTCTCTTAAGTCGCACTGGTGAAGTTCTAGGAAGTAGGAATGATTTCAAGATGAACACTTGCAGAGTGCACTCATCTGGGACACTGCTGTTGGACTTGACACATTTACCTCTGTTGGATCGTTCTTTCAAGCAAATGACACTTGCAGCATTGCGTAATCCAAAAGATCAACAACTTGCATCTGATGTACAAACCACTGGCCCAGATCTTGCAAGTGCTGGAAACTTTGACTCTGTAGATTTACCTGAACATGATGATGGTTTTGATGCACCAGAATCCATGTATAATGTTCCTGGTGATGGTGAAGAAATTCTTGGACAAGTTGCTGTTGAGAATGAACAGGAAGAGCAAGAAGAAAGAATAGCATTAAGGGCTAGAGTTGTTACCCCACAACAAACAACAAACAAGTTACCAGTAAAAGATCCCTGGAAATTGTTAGATCCCTATGATCCTGGTTTAAGTAAAGACAGACCATATAAGAAAGGAAAACCTTTCAAAAAGCCAGCTTCGTTAGTGTCACAGCAACATaagaagaaaagaaaacgagaagaaataaagaaagTTCCATCTCTCATTCCAATCAATCAGTTTATATCTCAAGCATTCTATTCTCATGCATCCAAAATGGTAAAGAACCCTCTGAAAACACCAGCTTTCCCAGAGTTTGAATATCTGTATTGGATAGAGTTTCGGAGGCAACAACAAGTACAAGCCAAGCAGAAAAAACTGGTGTCTCATCTTGCAGCTGGTGAAGAAATAGAAGAACTTAAAACCACTCTTAAACCAGATGAGGAAGATGATGTTGCAAATGAAGAACTAGGCTTAGAAGATGACCCAGCAGTGGCtgattatgatgatgatgatgatTTTGTTGGTGGAGAGGTAGAAAATGTTTGCATTGGAGAGAAGGATGTTCCTGTTCCAATGGTTGAACCAATGGCATTAGAAGACCCACCTGAAGGAGTTATTGTTTCCAGCTATGAAGAACTAGTTCGTCAGTATGTGGATGGTTACCTTTTTGAAGCCCAACAGTTTGTAAAGGAAACAGATTTGAGTAGGAGAGTACGAGATTGGGAGGAGAGGATTCTTCCAGTTTTATCCAAAGAGGAGACACATCGACCCTTTGACATCCATAAGTATGGTGAAGAAATAATGGCATCATTTAAAGGAAAGTGCAATCAAGCTTTCAAAGAACTAGTTCATGGAAAAGAAGCATTTGAAATCTGCAGACTATTCTTAGCAACACTTCAGCTAGCAAACAATTATAATGTAGAAATTACAGCTGATGGAGACGGAGAGAAATCTGTTGATACTATGAAGCTTCGACTCATGAAAGTGACTCCTGGAAATCAGGCAATAGCAACTTTTCAAGGAAGTACATCACCATAATAAATTATTTGAACAAACCTTAGGTCAGTTTTCAAATTTTAAAGAGTAGAAATCCAAACAAACCTCTTTGTTGTACCATTCCTTTCTTGTACAATACTAAAATTGTGTTTCAAGTCAGTGGTTGCATATAAAGTAAAATTTTGTATTTCTGAAAAAAGTTGAATTTGTAAAGGTTTTGAAACTCAACCTCTTCATGTTACTAGTCTACCTCAGCCCAGAGATTTTAAATTTTATTGTTCCTTTTTTTTTTTACAAAACCCTGTATAGCAATCATAACAGCGGTTATGTGACATCCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IBW4	Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1
Q8BSP2	Condensin-2 complex subunit H2 OS=Mus musculus OX=10090 GN=Ncaph2 PE=1 SV=1
Q641G4	Condensin-2 complex subunit H2 OS=Xenopus laevis OX=8355 GN=ncaph2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16858 all species →	CNDH2_C	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031739 all species →	Family	Condensin-2 complex subunit H2	Interproscan
IPR031737 all species →	Domain	Condensin-2 complex subunit H2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14324 all species →	CONDENSIN-2 COMPLEX SUBUNIT H2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0051306 all species →	Biological Process	mitotic sister chromatid separation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0128.g12.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.