Gene detail

Detailed information of amic_s0128.g5.t1 in Acropora microphthalma

Genomic Location: sc0000128_pilon:49896...54567
NR annotation: XP_044174887.1, LOW QUALITY PROTEIN: tryptophanase-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0128.g5.t1

CTTAATCTGAGATCAAGTATTAGCGAAAATCGACAGTCAAATATGGACAATGTGCATCGTTTCCAAACGTTTTACGAGCCCTTCAGAATCAAAGCTGTTGAGAAGATTAGATATTTAACACGAGGACAGCGGATTCAATGTTTGGAACAGGCCAATCACAATCCATTCATGCTGAATTCGGACGACATCGTAATCGACCTACTGACGGACTCGGGCACGGGTGCCATGAGTACGGACCAATGGGCTGCGATTATGAAAGGCGATGAATCCTATGCAGGCTCACCAAGCTACCGGAAGTTTGAGAAGGTTGTCAAGGACATTTTTGGCTTCCGTTACGTGTTTCCCGCGCATCAAGGCCGGGCCGCGGAGCGGATCTTATTTCACTGCAGCTTAGAGGAAGGGGACCTGGTACCCAGCAATGCGCACTTCGATACCACGCAGGCAAACGTTGAAAAATACGGAGGGAAGGCCCTGAATCTTCCTATTCCAGAAGCTCTGGATACAAACAAGAAGGCACCATTTAAGGGAAACATCGATATCTCCCAACTGAAGGAATTGTTTGCAGGTCAACAAAAACAGAGAATATCTATGGTAGTCATTACAATAACAAACAACGCTATAAGTGGAGCGCCTGTAAGTATGGAGAACATCAAGATGGTGTCCAAGCTCTGCCGTCAACAAGGAATTCCCTTCTTCCTTGACGCGTGCCGTTTCGCTGAAAACGCGTGGTTCATTAAAACACGCGAGGAGGGCTACTGTCATCTCACTCCTCTTGAAATCGCGCGCGAGATGTTCTCGTACGCCGACGGCTGCACCATGTCTGCCAAGAAGAATGGTCTCGTGAATATCGGAGGTTTCTTGGCAATGAATGACGAAGACCTTGCCGACAAATGCCGCAGGGAATTGATCATATCCGAGGGATTTGTGACCTATGGGGGACTGGCCGGAAGAGACCTAGAGGCTATAGCCGTTGGCTTGCGAGAGGTTCTTGATGAAGATTATCTGCAATACCAAGTGGGATTTGTTGAGATGCTGGCAGATTTGCTAAAAGAACATCACATTCCAATACTGACGCCTCCAGGTGGACATGCTGTGTATGTCGATGCAACTGCCATTTTGACACATATCCCCGAAGACCAGTTCCCGGCCTGGGCTCTTGTATGTGCGCTTTACGTTGAAGGTGGGATTCGTTGTGGTGAATTGGGCGGAGTAATGCATGGACAGGCTACTAAGTCTTCTAAGGATGCCGACGAAATTGAAGACGGTCGTGGAGAGCTTGTGCGACTCGCTATACCGCGAAGGACATACACCGAGTCACACATAAAATACGTGGCTGAAGTGTTTGGTTACGTTTACAAACACCGAAAACTAATCAAAGGTTACAAAATCACGTGGGCGCCAACCGTGTTACGTCACTTTAGTGCTCGTCTTGAACCCATGCCCCCATTGGATAAGAACGAAGAATCAGAGGAAAAGGATGAAGTCCCACAAAACCTACAGGGAGCAATACTAAACAGACACCAAGGATTAGTTCGAAGAAAATCGTATCCGATTTATAAATCTATTTATTGTTTGTGAATTATTGCTCCCCGAGGGATTGCAAATGACTGATTATTGGATTATATTGGAGTTTCATGAAATCAAAACATTCACTGTTTATAAGATAACACTTTCCTTTAATTAACATGGAAAAGGCATTGCTCCAACAAATTTCTCAAAGAATTTTTAAACTTGGTATCAATAGAGTGGATAAGGGCAAATTATCTCAGCAAAAAAAATAATAAAAACTAACATTTCGAGTGTTTGCcctttgcacaaagaagacgctttataatagggagctttggcttctacgacgggaacggtgacaacaccacaaattaagaattATTATCGTGCGGCAACATTAACGAGAAAATAAACTTTACTAAAGACAAAAACTATTCTTGTAAACTAAAATAACAGATTGGGTGAATTTGAATattaagaattggtcaagtgccgaaaaataagcgtgctgcacgtgcggTTTGGGCCTCACCTTCTCAACCGgcacgtgcggcacgcacttacgaacaattccttgctttcctctgcaaaacaacaacgtgaaattaccacacttacggttttgatgacaacttaagcatataaccgtaaattttctctgtattcaatttaccggcctgcacacaagtccagttgtagcgttcttcaaccaacattgcaaaatgcgagcaagatgCAAGAGTTCTCCGGACGACACACTCTAGATTACTCAGCTCCTTAATTACGTCATGATTTACAAACATGAATTGTTACTCACTTCACTTCACGTAATACACGACAATTATACAAGAGGAACGGTGCTATACCATATATTGGTTCACATCAGGAGCCCACGAGTGTGAGCCTctgagtaattatttttagaacttctttctattgtcatggctccgtggatcggatgaaaattaaggcatccgttcttataaatcttcttttattggcaatttgactgctattgcgcacgaggtcaacacaaaactcctggggaaagccccagtctgaaaggtaacggttccttcttatgaactcctGTCTATATTCTATATATTTTACAAAGTATCCACGAGTCTTTCATTCGAATATCGAAGAAAGCAGACTGTAAAGTAGAAAAACAAGTACATTATTCTTTTTAATGGGTTAACTATAAAGGTCTATATATATAGAGAGAGAATTATGCTTTATAAATGGTCGGTACGATATGTGCAAGGCAAAATTTTGGAATTGATTTATTTGCTCACTAAGCATTTTTTTCAGTCTAAGATTTAAGGTCTGTTTCGTTTCTCGTTTTTTTTTTGTTTGGATTTGCTATGTATTGAATTCTTGAGGAATAATGCTTAAAACAAATTAAAAAGCCACTAATCTCCGTGATAACCTCTTGATTGTGATCAAAATGAATCATTGATTAAACTCGATTTAGATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2S1V4	Tryptophanase OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=tnaA PE=3 SV=1
Q0C406	Tryptophanase OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=tnaA PE=3 SV=1
Q8R9K5	Tryptophanase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=tnaA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01212 all species →	Beta_elim_lyase	Beta-eliminating lyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001597 all species →	Domain	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Interproscan
IPR011166 all species →	Family	Beta-eliminating lyase family	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32325 all species →	BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0009072 all species →	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0016830 all species →	Molecular Function	carbon-carbon lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01668	E4.1.99.2; tyrosine phenol-lyase	EC:4.1.99.2	Tyrosine metabolism	ko00350	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.