Gene detail

Detailed information of amic_s0128.g67.t1 in Acropora microphthalma

Genomic Location: sc0000128_pilon:981870...989097
NR annotation: XP_015762931.1, PREDICTED: pyrophosphatase PpaX-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0128.g67.t1

TTGTTTTTTTTAATGGTGGAGGTCTCGATGATGTTTTCTCGAGAAGGAAGATGTACATAAATCGTTGGTTTACCTCACCTTAAGCTTCATAGCTCTGGATTAGCCACTGTGAAACATTTTGTATTAGCTGAAAAATGGCAGTTTGTGGCAGCACGAGAAAAATAATTTCTAGTCTCCTTCAAGTACACTTTAGATGTGTAAGGAAAATTCATCAAACTTCCCAACCCATATTGGCAGGTACTACCACTTGGGCAAAATCATTGCTGATGCAGAGTAGGGGTGATCCAGCATTATATTCATCTCTTGCTGGTGATGGTGTGAGCCCTGGATCATCCAATCAGATGAATCCATCTCTTGTCATTTTTGACAAAGATGGTACCTTGATTGATGCCAACACTGTTTGGATCCCGTGGATGGAGAGCCATATACAGGAACTTGAAGAAGCGACTGGCCTCACTCTCGCTGATGACCTGTACAAGGAAGTCGGATACTGTCCAGACAAACATGTATATTCTGATGGAGGCCTGCTAGCTCATGCCACAGTCGCTGAAATTAGACGGGCCTTTGTAACAGTTCTGGTGAGGTCTGGTGTGAGCCAGGAAAGAGCCCAGAATTTGGTTGATAACTGCTGTAAGGAGTTTGACAGCGGTGACCATGAGACTTTGGCACCATTGGGGGATCTCCCTGCTATATTTGAAACTCTTAAGGCAAAGGGGGTAAAAACGGCCATTTGCACCACAGACAGCCGTGAAGGTACCCTGTCTGCTCTGCACAGGCTAGGCCTGATGCACATGATTGATAAGATTGTTTGTGGGGACGACAAGGAGACAAAGCCAAAACCCCACCCTGAAACTGCATTGGGCATTTGTGAAGCTCTTAATGTCTGTCCAACTGAAACTGTCATCATTGGGGACACTGTGGCTGACACTACCATGGGGAATTTGGCAGGGTTGGGTCTTACTATTGGTGTTCTTAGTGGGGCTGGGAACCGGGATTTCCTGGAGAAAGAGGCAGACGTTGTTCTCAACAATGTCAATGAGCTTCTTGATACCTTGTATCCAAATGATTCCTGAACATCTGTAAAAGTAATACTTTCCTTTTACGGAAGCTAATTGGGTGAGTAATAAGGTAGACTAAAATGCATGGACATAGCTGTGTGTAAAAGAGGTTTGAAATTTGAATCTTTTATTCTGAATTTGTCCCTACCTGATATCTACCATGCTACTCATAGTTTAGGCTCCATTGTGttattattactattattattattattattatAGCAGTTTTGGAATGTGGGTTTCCTAATTTATTGGGTGAGCCACCTTAAACTTTGGATTTGGTAATTATTTATTGTTCTGTATACATTGATTGGATATGTTGCAGTAAACAGTATAAAATAGTTTTGCTACAGACCTTGGCAATAAAATTTATTATTTAATAATTCTACTCGAAGTCTGGAAAATTGTTATTGCTGTGTTTTAGATAGACACGTCACACGCGACGTCTTGTTGGTCATCGTCATTTGTTTATTTTCCATTTCATATGCAGCTTTTGTTGATTTATTTAAGAAGCTTTTTATTTAAGAAATGTACATATTTATTAAGTCTAATCCAGTTGTCTAGTGATGGATTTTAATAATTAAAGTTATTGTGATTATTTACTGTGGTATTTCTACATGAATGGCACATTATAAAAGCTTCTTTAGGACTGCTTTGTTTGCACAGAGTTTGGCTTTATTTTGGGAACAAAGAGTAGTGTGTTTTTTGTTTCAACTACATTCTTTGTTATAAATGGTTTCCTTACCTTGGTATTTGGAGGTGGGGTTGGCATGTCAACCAAAGGTGATGCTGCAATTATTGGTTAAGTGTTTTTCCTTTTGACAGCCAAATGAAGTGATGACTGTATTCACAAACATGGAAACAGGAACGAGGACCAAAATGAAAAACTTGATGAGATCACACAGGTTGAAGATTACTTTAACATTTATGAAAGATTGTTGCAGAGCTGAAAGAAAAATTAATAAAGTGGAATGTGTTGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13419 all species →	HAD_2	Haloacid dehalogenase-like hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041492 all species →	Family	Haloacid dehalogenase-like hydrolase	Interproscan
IPR023198 all species →	Homologous_superfamily	Phosphoglycolate phosphatase-like, domain 2	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR050155 all species →	Family	HAD-like hydrolase superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43434 all species →	PHOSPHOGLYCOLATE PHOSPHATASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0128.g67.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01091	gph; phosphoglycolate phosphatase	EC:3.1.3.18	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.