Gene detail

Detailed information of amic_s0129.g14.t1 in Acropora microphthalma

Genomic Location: sc0000129_pilon:121136...129439
NR annotation: XP_029186185.2, porphobilinogen deaminase-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0129.g14.t1

GGTTGTATAACAGTATTGATAATATTATTATCAAACTCTTATGGCCCTTTAGCTTAATCAAAGTAAACCACCACAACATTTCCATAAAGATGCTAAAAGTATCACCCCTCTTTTCAAGGCAGATTTATTCCAAGATATAACGCATACAAAAATGCCATGGCATGCAAGATTGTAACATCAATCATCCTTCATCACAACACTGCAAGAAAATTAAGCTAACGCCCCTGATATCCAGAAACTAATGCTCGGTATCATTGGCGAAAAGTTCGAAAATCCAGAATAGCGTATTCCAGCGAAGACTCTGTTTAGTTACCAAAAATATTAAATTATTGTCCCTGAATCACGTGACTGATCTTCAGTTCTTTGTAAAGTCAAACTTGGGGAACTCCTCCAGGTTTCCTTCACCAAATCTTTTTTGAATTTGCTGCATTTCTCCGTCAATTTTTGTCTTCATCTCAGGCGTCATATCGACTAAACCTCCACCGGTTGATGAGCTCTTCTTCTTGTAATCTTTCAACTTCTCTGCGAAGAGTTTCTGTATGGGATCACTGCTCTTATCTGACAGTAAAACGGCTGCCATCCCAATTTTCCTTCTGCAATCTACTTTGCATACTACAGAGGAGCGAGAAATTAACCATGGGAAACGAAACACTGCCGCCATAGTGTTGTACAACCTCCTTCAATATCCAAGATGGCTGACTGCAATCATTCACTAGCCTCGGTTTCAGATGGAGGTCAGTAGTGTCCAATCTACTCGCACGTGGAGAACCTCTCGGTAAAAATGGCAGACAAAGAAACGGTTATCAAAGTAGGATCACGCAAAAGTCAGCTGGCCCTTATTCAAACAAATGTCATTATTGATGAACTTAAGAAAATGAATCCAGACAGAACCTTTGAAATTGTCTCTATGTCAACTATTGGAGATGATATTTTAAACAGACCATTGCCTAAAATTGGTGAGAAAAGTGTCTTCACTAAGGAACTGGAAGTTGCTTTAGCCAACAGAAGTGTCCACCTTGTTGTTCATTCACTGAAAGACCTTCCTTCCACTTTGCCTCCAGGAATGTTGATTGGAGCTGTCTTCAAACGGGATGATCCTCATGATGTAGCTGTGTTTCATCCCAGGCACAAAGGATCTACACTTGCTGAATTACCAAAGGGAAGTGTCATTGGGACAAGCTCTCTAAGGCGCAGTGCTCAGCTCAAGAGGGCATTTCCACATTTGATAATTGAGGATGTTCGTGGTAACTTGAATACACGACTGAGCAAACTTGACAATGGCGATAAATACAACGCCCTTATTTTGGCTGCAGCTGGAATGGAGCGTATGGGATGGAAACAGCGAATTGACCAGATTCTCGGCTCTAATGAGTGTTTGTATGCTGTGGGACAGGGTGCTTTAGCCGTAGAAGTTAACGTCGATGATACTGAAACGATAGAGCTGGTGTCTAAACTGATTGACAAACACACAAGTTTGTGCTGTGCGGCCGAGAGAAACTTCCTCAAAACATTGGAAGGGGGTTGCAGTGTGCCAATTGGAGTTAACTCAAGTTTGGAGAAGACTAATCAGCTGAGTATCACCGGAGCAGTGTTCAGTCTGGATGGAAAGGAGTGCATCATGGACACTGTCACGGGGCTGCTCCCAGTCCCCTCTGTCTTGCCAGGTGGCTGCCCTCATTCCGCGCTTACGCAGTCCAGTATTTTTGTCCCTGAGGAAGTTCGTGACTGTCTTGTGGCAGCCGAGAAGCTGGGAGAACAGTTAGCACGAAATCTTATCGCTCGCGGTGCAGAGCGAGTGCTGCGGGCAGCTCGAGAAGAAAAAGACCACGTTCCTTAAAAAAAAAATTGTTTTTTTACTAAGTTTGAAAAGTAATTTTTGAATTTCCATGTTTTGAGCGATTCTCTTGGTTTTTGATTTTCAAAACTATCAGTACATTCCCAGCCAATCAGTGGTAAAAGCGAAACCTATCGTGATTGGCTCTCGCGCGATATCCCGGGCTCAGCGCCGGCGACATTTATATGCATTGCGCTATGATTGGCTCATTTGACTCCTTGAATCTTCTTGGATTGATCAAGATTAAGGCTTTGCAATGTATTTTTTGTTATTGCATTGAAAGCCATTCGTGTGTACTGTGCGACCGCAGGTGCGGGTGCACTGACAAAGAATATTGTTAGACTTAACTTAGCACACAAGAACTAGAGACATACAATATCACCAGGTAAACTTTAGGACATGGGAAAATATTTCCATACGGGAAGGTTATAACAGACCCACGAATCTTAACTTATGATTTCAATCATGATCATGGGTTGACATTCGAAAACAGTTCGCTTCTATCAACAACTTAAATAATGTCATTTTTAGGGGCGGTTAACCCATACATTTTCAATGCAAAATTATCCCGCTTTTTAGGAAAAAAGCATTTCTTTCTTTTATACGAATACCATGTAACATTGATCATTTTTAGGTTAGGTAGTAATTGTGTCAATTTGAAGGAAGCTGAGAATTATTTATGTTGTTAGCTGAGTGGTATTTAAAATCGAAAGGGTCTCGGCAAGAATTCAAATTTGTTGAAAAATGCATTTTCGTAACTCACTCTCTAGCACGAAGCATAAAATTTCCTCTACATCCTCAGGTTAATTTTGCATTTTAGGTTAGAAAACTGTAATCGTTAAATAATCGTTCATTGTTGCTGAGTTGCCTGTCAGATGAATAGAATCAAGGATGCCGTCAACTTATTTCACTTGTTTTATTCTTATTTGCAATTGACCTTTATCCCACGGTGGCCATGTTGGTCAGAGAACATAGATTTCgggggcaaaagaaaagtgtgtggtccctcaagattcaatatggccgcaatgtgataaaTTCTACAATCACTTCCTATGCGCGACTCCACACCTCCCATACCAGTGTTGTTTTACAGGAACAACATTGAATAGGAGCAGTGGGGGAAGGGGTGTTATTCTCCAGTCACAACTTTTGCTAAGGATTGTACTCTGCGTAATATTGTTCATCGTGTTGGTCAGCGGCAGCCTCGTTTTCATTTGTGACCAGGTTCTCAAGCGTACAAAGGATTGGGTTTAACCaaaggttgaattaccaccatgaaagatttagaatgcttacatgtcgagcgttagcccttcgtcagagtagaaaataagaaattgtaaaatgtcag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08397	Porphobilinogen deaminase OS=Homo sapiens OX=9606 GN=HMBS PE=1 SV=2
Q2KIN5	Porphobilinogen deaminase OS=Bos taurus OX=9913 GN=HMBS PE=2 SV=1
P22907	Porphobilinogen deaminase OS=Mus musculus OX=10090 GN=Hmbs PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004112 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01379 all species →	Porphobil_deam	Porphobilinogen deaminase, dipyromethane cofactor binding domain	Domain	Interproscan
PF03900 all species →	Porphobil_deamC	Porphobilinogen deaminase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000860 all species →	Family	Porphobilinogen deaminase	Interproscan
IPR022419 all species →	Binding_site	Porphobilinogen deaminase, dipyrromethane cofactor binding site	Interproscan
IPR036803 all species →	Homologous_superfamily	Porphobilinogen deaminase, C-terminal domain superfamily	Interproscan
IPR022417 all species →	Domain	Porphobilinogen deaminase, N-terminal	Interproscan
IPR022418 all species →	Domain	Porphobilinogen deaminase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11557 all species →	PORPHOBILINOGEN DEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004418 all species →	Molecular Function	hydroxymethylbilane synthase activity	Interproscan
GO:0033014 all species →	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0018160 all species →	Biological Process	peptidyl-pyrromethane cofactor linkage	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01749	hemC, HMBS; hydroxymethylbilane synthase	EC:2.5.1.61	Porphyrin metabolism	ko00860	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.