Detailed information of amic_s0129.g27.t2 in Acropora microphthalma

Genomic Location: sc0000129_pilon:273557...282375
NR annotation: XP_015769016.1, PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UHP3Ubiquitin carboxyl-terminal hydrolase 25 OS=Homo sapiens OX=9606 GN=USP25 PE=1 SV=4
P57080Ubiquitin carboxyl-terminal hydrolase 25 OS=Mus musculus OX=10090 GN=Usp25 PE=1 SV=2
D3ZJ96Ubiquitin carboxyl-terminal hydrolase 28 OS=Rattus norvegicus OX=10116 GN=Usp28 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008253 (this species only)
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF02809
all species →		UIMUbiquitin interaction motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003903
all species →		Conserved_siteUbiquitin interacting motifInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR018200
all species →		Conserved_siteUbiquitin specific protease, conserved siteInterproscan
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR009060
all species →		Homologous_superfamilyUBA-like superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for amic_s0129.g27.t2. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0129.g27.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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