Gene detail

Detailed information of amic_s0129.g48.t1 in Acropora microphthalma

Genomic Location: sc0000129_pilon:683876...690524
NR annotation: XP_029186267.2, LOW QUALITY PROTEIN: chorion transcription factor Cf2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0129.g48.t1

TAACAATATATCAGATGATCACACCCGCGTTTAGGGGAAAAAAGAATAAGCCTGCAAACAAGGTAACGGTTCCTTTTGCGGCCGCCGGCCAGTGTTGAGCTACCAACGGCACAATCTCGCCGAGAGCGGACGCGGTTAAACGGATCTCACCAAACCGTTTCTTAAACACGCAGCGCCGCTAACGTTTTTTTTTTCTCTGTAACGCTTCGCTTCACCAGCTTATTCTCTCTTAGTTTTGACTAAAGTTTAAAATAAGTGGTTTTCGTGGTAAAAAGTCGAAGTTTCCCTGGCGGGCCGTTTAGGAAGCTTGGCCCGCGCTATTCGCTTATTCGAAATGCCAAAATCGTTTTTAGTGAAGAACAAGAAGGCTCGTCGCGTTGAAGACGAAATTCTGGATGGCACGAAAGCCGCTGCTAGCGAAGTAACATCTCCAGATGAAAAGAAAATGTTACCGGAAGAGAAAGAATTAAATCAGGGGAATTCAGCCATTGATAATAAAGATGAGAACGAAGCCAACAATTCTGAGCCAACATCACCTGGTCAGGGTGTGGAGAAAGAAATGTCGTCACCTTCTTCTCATCGGTCGCACGTTAAAAATGAAAGCGATGTATTTGCAAGACCAGAATCACAGGAAGCGCGAGAAGAAGCCGTTGAAAGCTCGAAAGCTCTCAATGACTTGTTTAGTTGGAGCAGAATAACTTCGAGGTTCGAATTACAAAACCTACCCCCTCCGCCTAAACTAATAAGCACTGTCACAAGAAATGGTACATCGAGTCCTTGTTCCACTGAGCGTCATCCGTCAATGCCTTTTGGTGAAAGGCGCAATTTTCCACTGACAGCTGGCAATTTTGGGCTGGTGGGATTTCTTGACCACCGCATCCCTTCTCTTTCAGAATCAATACCCGTTCGTGCATCTTTGGATGGCCTTCGTGAAGTTTCCCTTAATCTTCGTCACATTTCCGAACATCATCGGGATTCTTCGCTGTGCCCGAGGATTCCGCAGCTCACGCCCGTTCCGCAAATGGATGGGAGTCACTTTTTTCTTCACAGCCATCCATTTTTAACGCCTCATCCACAGCAGGACTGCTTGTCAAATCTCACAAACGAGGAACAGGAAAGGAAACGCTTATTAGACGGAGACGAAACGAAGTACAAATGCGAGATTTGTAACAGTTCTTTCACGCTCCAGCGATTGTTAAATCGCCACATGAAGACGCATTCTTTCTACAAGCGCTACCATTGCCAGTTCTGCACAAAGGGTTTCAATGATACGTTCGACCTCAAGCGCCACATAAGAACACACACGGGTATCAAACCCTTTAAATGTAGCAGATGTGATAAATCGTTCACGCAGCGTTGTTCGCTAGAAGCGCACCTCACGCGCGTTCACGGCGTGGTACACAAGTTCGGTTTCCGGGAAAGACGCTCGAAAATGTTTGTCTGCGAGGACTGCGGTTGCACGTTCACCGAAAATTCAGATTTTATGAAACATGTGCACGAGTTTCATCCTGAGACTGAGAAAGTCATGAGGGCGAGGCGAAACGGAGGGTTTAATGCGAAAATAAAATGAAAAGACTATCGGAATTTCAAGGTAATTGCACCACGTAACATTCATATTCTGTTCATCGTCATGGAAAATTCCGGTTTTTTATTTACAACAGCACCTGCCTCAAAAGTCTTAGCTCTTTGGCGATGAAAGAGAAACTAAGCGAGTTTCCGTGCACTGTTCGCGTGACTTCGCGTGTTAGTCGAAGCGACTCATGCTTCCTCAAGGTCAAACGCCTACCCAGCTCACAGCCAATCACCAATTGATTTACTTTATGGTAAAATTTCTGTTTGTAAGGAAGGATAAGTATTCAAAAAATATACGTTTTGCTTTTTAAAAAGTATTGGACATTATATGTTTTATGATATGAGTCTTGTTTCCTATGGAAATTAGTTTTTGCTTTTTGTTTTCTGAGAGTAGAGCCCAAAGTAGAAGCCATTCTCTTTTTCCTGATTTAAACAACGAAGTTTCATTCAATGAGTTAACATGTGTTTTCTGGTGGTTCTCTTTGCGTTTTTGCGTCTTTAAACCTTCATTTTTTCCTTAACTGTCAGATTCTTAATAAACTTGCCACCTCATGATGAAGAAAAGAACCTGTTTATTGCAACTTTACCTCCTTCAGAAAGAAAGAATTTATAGATTGAAAAAATAATTTGTTGAGCGATCTGCCTGGCAGTAGTCAGTTTTGACTTGATGTAATTGACACGAAATGTGGGTGTCGAAAAGAAATTTATATTGTGTTT

Protein

Uniprot

Gene family

Uniprot term	Description
A2VDT4	Putative transcription factor Ovo-like 1 OS=Bos taurus OX=9913 GN=OVOL1 PE=2 SV=1
O14753	Putative transcription factor Ovo-like 1 OS=Homo sapiens OX=9606 GN=OVOL1 PE=1 SV=3
Q9WTJ2	Putative transcription factor Ovo-like 1 OS=Mus musculus OX=10090 GN=Ovol1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR027756	Family	Ovo-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10032	ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09216	OVOL; ovo	-	Transcription factors	ko03000	deepkoala