Gene detail

Detailed information of amic_s0129.g49.t1 in Acropora microphthalma

Genomic Location: sc0000129_pilon:699011...714494
NR annotation: XP_044180452.1, DNA repair protein XRCC1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0129.g49.t1

ATGCCACTTATTCGACCGAGACATGTCTTGTCCTTTAGCAGTGAAGATGTGGTCCAACCAGCTCAAAATATACTGAAATCAGAAACCTACAGGAAATGGAGATGTGCGATGGGTGGAGAAAAACAGGCTTCTGTTATATTAGAGCTTGAGAGAGCAACCCAGATCCACTCAATTCACATTGGAAACAATGGCTCTGCTCTTGTGGAAGTGTTGGTTGGTCGATCATCTTGGAGTGCTGATGAACAGTATCAGGTCCTTCTTGTGGCATCATCTTTTATGAGCCCATCTGAGAGCAAATCTTTTACCAACACCAACAGGGTCAGAATATTTGGTCCTGACAAACTGTCCAAGCCAGTAGCAGCACAAAAGTGGGATCGAATCAAAGTTGTCTGCACTCAGCCATTTAACAAAAATGAACAATATGGTCTGTCATTTGTAAACCTTCATTCCCCTCCAGAGGATTTGGATGGTGACCCAGAGGAAGCTGTTGCAAGTCCTTTCTTACCAGCTTCTTCAAAGAGACTTGGCCGATTTACTTTGAATGATGACAGTGACAGTGAAGAGAAGAAAAGAATGTCTTCTGGAAGTCTGTTCTTCAAAAAGTTTGAAAAGAAATCTTCACCTCCTGCTCTGTCTATGGCTGCCGAAGTTCGAGCAGCCTCCATCGTCACTGGCTCATCAGATGACCAAAAAGTAGGTACTGCCAGCATTGTACGTGATGTGCGACAACCAGGAGCCAAGGAGAGACAGCCAGTGGCGAGAGGTGGGCAGACACCTGTTCGAGACAGAAGCACTGTGATTAAAAGTAAAGTTGATAATGCTGACGTGAAAGCTTCGGCGAAATGTGATGAAAATGAGGCAAAGAGAAGATCAAGTGAGGGTTCAAAACGAAAGTTTGAAGATTCACCAAAGGAAACGAAAAGTAAGGGGAAATCACCTCCACCAACAAAAAGAAAGCGAGGGTCACCAAGTCGTAATGATGGTAGTTCAGTCCCATTGCATGAAATTATGAAAGGCGTGGTCTTTGTTCTGAGTGGATTTGTGAATCCTGAGCGAGGCAATCTCCGCGATAAAGCCTTACAAATGGGAGCGCAGTACAAACAAGACTGGACCAGAGAATGCACCCATCTAGTTTGCGCATTCGCGAATACACCGAAATTCAATCAAGTGAAAGGTAAAGGAAAAATCGTTACCAAGAAATGGATCTTTGACTCTTTTGCGAAGAGTAAACGCTTGTCTACTCGGCACTACCATTTACCAGGTGATAGCAGTTCATCTGCAGAAAGCACCGACGAGGAAGAAGTTCAGCGAAAGAGAACACCAATAGCGAAAGATGCCCCCACAAGCAACAAAAACAACACCAGAACTCAAAACGAGAATCCCTCCCAAGAAAGAGAGAAACGTCCTATCGGAAACACCGATCAAATTCCAGCGCCTGATACAAAGAGAGAAGAACCACAGAAGTCCACCGAAATAGACGATATATATGGTGGCTCAACGGATGAAGAGGACTTTGGAAAAGGTTCACCTACAGCTAAGAAAAACGAGGTGATTGATCCGTCGAGTCCACCGGATACTTCCCCCAGTGACCCGGACACAGAGGATGAATTAAGGAGAGTTCAAAATAAACGAGGAAAACCCGACAGAGGTGAAGAAGATGATATCTTTGGTGGCCAAACTGAAGGCGAAGAAGAAGAGGCAAGAAAGAAGGAATCCGCTGACGATGTCTCTTCAGGCTCAGATGGGGAACTTCCCTTGTTACCAGACTTCTTTTCTCACAAACACTTTATGTTGTACGGTGAAATTGGCGCCAAAACAAGGAGGCTTCTGATAAGATACATCACGGCTTATAATGGAACTCTCGAGGAGTACATGAGCGACAGTGTTGAGTTTGTCATAACAAACGAAGACTGGGACCAAAACTTTGATGAGGCTCTCAAAGAAAACGCTTCCCTAGCTTTCGTGCGACCCAAGTGGATCATAGTCTGCCACGAGAAAGGTGCTCTTGTTCCATGTCAGCCCTACATTGTAGCGCCTTCTTAG

Transcript

amic_s0129.g49.t1

CTCGTTTGAAAAGGAGGAACTTGCACTCCTTTACGTATTTTTGAGCTTTTTATTTCATTTTCATTGCTCATGAGGCTCTATTATGCCACTTATTCGACCGAGACATGTCTTGTCCTTTAGCAGTGAAGATGTGGTCCAACCAGCTCAAAATATACTGAAATCAGAAACCTACAGGAAATGGAGATGTGCGATGGGTGGAGAAAAACAGGCTTCTGTTATATTAGAGCTTGAGAGAGCAACCCAGATCCACTCAATTCACATTGGAAACAATGGCTCTGCTCTTGTGGAAGTGTTGGTTGGTCGATCATCTTGGAGTGCTGATGAACAGTATCAGGTCCTTCTTGTGGCATCATCTTTTATGAGCCCATCTGAGAGCAAATCTTTTACCAACACCAACAGGGTCAGAATATTTGGTCCTGACAAACTGTCCAAGCCAGTAGCAGCACAAAAGTGGGATCGAATCAAAGTTGTCTGCACTCAGCCATTTAACAAAAATGAACAATATGGTCTGTCATTTGTAAACCTTCATTCCCCTCCAGAGGATTTGGATGGTGACCCAGAGGAAGCTGTTGCAAGTCCTTTCTTACCAGCTTCTTCAAAGAGACTTGGCCGATTTACTTTGAATGATGACAGTGACAGTGAAGAGAAGAAAAGAATGTCTTCTGGAAGTCTGTTCTTCAAAAAGTTTGAAAAGAAATCTTCACCTCCTGCTCTGTCTATGGCTGCCGAAGTTCGAGCAGCCTCCATCGTCACTGGCTCATCAGATGACCAAAAAGTAGGTACTGCCAGCATTGTACGTGATGTGCGACAACCAGGAGCCAAGGAGAGACAGCCAGTGGCGAGAGGTGGGCAGACACCTGTTCGAGACAGAAGCACTGTGATTAAAAGTAAAGTTGATAATGCTGACGTGAAAGCTTCGGCGAAATGTGATGAAAATGAGGCAAAGAGAAGATCAAGTGAGGGTTCAAAACGAAAGTTTGAAGATTCACCAAAGGAAACGAAAAGTAAGGGGAAATCACCTCCACCAACAAAAAGAAAGCGAGGGTCACCAAGTCGTAATGATGGTAGTTCAGTCCCATTGCATGAAATTATGAAAGGCGTGGTCTTTGTTCTGAGTGGATTTGTGAATCCTGAGCGAGGCAATCTCCGCGATAAAGCCTTACAAATGGGAGCGCAGTACAAACAAGACTGGACCAGAGAATGCACCCATCTAGTTTGCGCATTCGCGAATACACCGAAATTCAATCAAGTGAAAGGTAAAGGAAAAATCGTTACCAAGAAATGGATCTTTGACTCTTTTGCGAAGAGTAAACGCTTGTCTACTCGGCACTACCATTTACCAGGTGATAGCAGTTCATCTGCAGAAAGCACCGACGAGGAAGAAGTTCAGCGAAAGAGAACACCAATAGCGAAAGATGCCCCCACAAGCAACAAAAACAACACCAGAACTCAAAACGAGAATCCCTCCCAAGAAAGAGAGAAACGTCCTATCGGAAACACCGATCAAATTCCAGCGCCTGATACAAAGAGAGAAGAACCACAGAAGTCCACCGAAATAGACGATATATATGGTGGCTCAACGGATGAAGAGGACTTTGGAAAAGGTTCACCTACAGCTAAGAAAAACGAGGTGATTGATCCGTCGAGTCCACCGGATACTTCCCCCAGTGACCCGGACACAGAGGATGAATTAAGGAGAGTTCAAAATAAACGAGGAAAACCCGACAGAGGTGAAGAAGATGATATCTTTGGTGGCCAAACTGAAGGCGAAGAAGAAGAGGCAAGAAAGAAGGAATCCGCTGACGATGTCTCTTCAGGCTCAGATGGGGAACTTCCCTTGTTACCAGACTTCTTTTCTCACAAACACTTTATGTTGTACGGTGAAATTGGCGCCAAAACAAGGAGGCTTCTGATAAGATACATCACGGCTTATAATGGAACTCTCGAGGAGTACATGAGCGACAGTGTTGAGTTTGTCATAACAAACGAAGACTGGGACCAAAACTTTGATGAGGCTCTCAAAGAAAACGCTTCCCTAGCTTTCGTGCGACCCAAGTGGATCATAGTCTGCCACGAGAAAGGTGCTCTTGTTCCATGTCAGCCCTACATTGTAGCGCCTTCTTAGTACCGAGAATTATTTACTAGCAATGGATAAAGAGTAGCTGGTTGATTTTTTGTTGACGACAGAGCTGTCGTAATCAAGTGGGCGAGGATCCCATTCGCTTTCCCACTTTTTTTTATTCGACGGAGATAGGCAATACAATGGAATAGTGAACACTTTAAGAAGAACGATGACCCAAACAAATCATTTTGGTAAATAAAATAGGGTTGAACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18887	DNA repair protein XRCC1 OS=Homo sapiens OX=9606 GN=XRCC1 PE=1 SV=3
O54935	DNA repair protein XRCC1 OS=Cricetulus griseus OX=10029 GN=XRCC1 PE=2 SV=1
Q9ESZ0	DNA repair protein XRCC1 OS=Rattus norvegicus OX=10116 GN=Xrcc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001841 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01834 all species →	XRCC1_N	XRCC1 N terminal domain	Domain	Interproscan
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR002706 all species →	Domain	DNA-repair protein Xrcc1, N-terminal	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR045080 all species →	Domain	XRCC1, first (central) BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11370 all species →	DNA-REPAIR PROTEIN XRCC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000012 all species →	Biological Process	single strand break repair	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10803	XRCC1; DNA-repair protein XRCC1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.