Gene detail

Detailed information of amic_s0132.g17.t1 in Acropora microphthalma

Genomic Location: sc0000132_pilon:286896...289545
NR annotation: XP_029182658.2, poly(A)-specific ribonuclease PARN-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0132.g17.t1

CGTGCTTGCACATGGCGGGTGCTCCGAGACTCCTGACTTGAAATGGAGATTGTACGTTCAAATTTCAAGGAATCTCTCAATACTGTCTGTGAAGCGATTGATTCAGCTTCGTTGCTTGCCATTGACGCCGAATTTTCTGGTCTAAATGTAAAGTGGGGAGCGGAAAACTGCTTTGATACTCCTCAGGAACGCTATTCCAAGCTGAAAGAAGGTTGCAGAGATTTCATTATAATTCAGTTTGGACTGTGTACCTTCACCTGGGATACCAATCAGGAATTGTACATTGCCAAGCCGTTTAACTTTTACATATTCCCCAAAGTTTGGAATCGGCAGTGCCCAGATGTTCGCTTTTTATGTCAAAGTTCCAGCATTGATTTTCTCACTGAGCACAACTTTGACTTCAACAAGCTTTTTCGAGAAGGGATCTCGTATTTACGCCCTTATGAGGAACAAAAACTGAAAGAGTATTTTATTTCCAGGAATACACAAGACTCCTTCACTTCAACTTCCCTTCTCTCCCCTGACCATGCAGATGAGACCAGTGAGGGGTCCTCACAAAAGCCACTTAGGTCTGTTCCCCCAGAACACAAGGAATTCGTTGAAAAGGCTTGTGACACCATTGAAAAAATGTTAAAAGATCCAGAGGAGAAGGTTACTAAATTTCCTCCCTGTAATGGCTATCTGAGAAAATTGATTTACCAAAATGTAAAACAGCGGTTCAAAGCTGGAATTCATATGGAATCCTCAGTCAATGATAAGAAGGAACGCTTTATTGTGGTAACTAAAGTTAGTGAAGACGAGAAGAAGAAATTTGAAGAAGACAAACTTGCCAAAGAGGAAGAGCTTGTTGACAATGCTGTTGGCTTCTCGCAGGTTGTGAAGATGATTTCACAGTCTGGGAAGTTGGTTGTTGGTCACAACATGTTCCTTGACCTACTTCATGTAATCGAACAGTTTATGTGCCCTCTTCCAGAACTCTTTGACGATCTCAAAGCTACTGTCAGAGCAGTATTTCCCAGGCTTGTTGACACCAAAGTTATGGCAAATACTCAGCCCTTTAGAGATCTCATTCCTTCATCCGTGCTGGCAGATCTGGTGAAGCACGTCACAACCAAGCCATTCAAAAAGCCAGGGGTGATGTTTGATGAAGGATTCTCTTGTTACAAGAATAGCCAGGAGAAGCCTCATGAGGCAGGCTATGATGCTTACATCACTGGCATGTCCTTCCTTTCCATGGTAAACTACCTGGGAACATTCCAGACCCCCCCAAAAGTCAATGTATCACCAGATTCCTCCTTGGTTGTACCATTTTTAAATAAGATATTTGTTATGAAAATGGAAGATATTCCTTATCTGAACTTAGCAGGCCCTGACCTGAATCCATCTCGTGATCATGTGTTCCATTTGACATTCCCATGCGATTGGAAGCAAACAGATATTCTTGACTTGTTCAATAGGTTTGGGTTTGTTTATATCTCTTGGATAAACAGCACCTCTGCCTTCATCTCATTGGCACGAAGAGAACACGCCAGCAAAGTGTTAGATGCATTGGAACATGAAGAAGAATGTTACACCATAGTTTCGTATGCTGAACACAGAAGACAGCTGTATGGTTCACTTGAAGATGAACCACGCAGAACACCTTTCAAAAGATCAAGGCAGTTGGAGGAAGTTGGATGGCAAACATCGTCTCCGAAAGATAATCAAACAAAGAAGAATATCACCAGTGAACCAGAAGATGGAGAAATCTTGGATGAAGATGAATCACCTGAACCAGCCAGAAAAAAGCCGAAAAAAGAAGTCAAAGTATTTCAGGAACCAGATGATTGGTAGTTTGGAAAACCATTCTAACACTGTTTATACATCTCTTATCATCTATAAAAATAACAAAAGTGGAACAGTACAAAGCTATTCAACTTTCAGATTCAAATTGACAAAATGCACTTCAAGTAAAACAGTTAAAAGCATCTCTGTTAGTTAGAATGTTAAATTTGCAGACTTTCATGCCGATAAAAGAAGCATCAAAATAATACAGTATGCATAATTTAGTGTGATTCATAATACTCATCAATGTAAAGAGACTGGTATTGCTAGACATCATTGTATGTAAAAATGTAGCTAGTTCTAAAACACATATCTCTATTGTAAGCAAAATGGTAGTGGGTCAAAACACGAGAAACGAAGATCCGCAGACCACCCCGCTCAAGAGAAATTAAGTGAAAGAGGAAACTTATCTAATAACTCTTTTAATTTGTGGCATCTCAATTCAGACGTGAAGTAATTTGTGACCAATACTAGTGTTCTATGATTTCCCATATTTAACCAACTAGTGTGGCGGGAATAATACCCTCTTTTTTCAAAATTTGACATCATTGGCACTGTAACATCCAATAGCTCAAATGAAACCCTCCTGCTGGTTTGCAAAAATATTTTATTCTTCTAGAAAAACAATCACTTATGTGGAACCAAGGGAAACCATCTTTGACTTTTAATATTTTTGGTTAGAGTGTCCATGAGTTCCTTGTTGCAATGGTTTGAATATACTCAGAAGAGGTTAAAAGCAAATCTTTTTTTTATTGCACACATGTTACTTCATACTGTATCCTGATATGCAACAACAAGGAAACTCAATTAAAAGTTTGCAACAACA

Protein

Uniprot

Uniprot term	Description
Q90ZA1	Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1
O95453	Poly(A)-specific ribonuclease PARN OS=Homo sapiens OX=9606 GN=PARN PE=1 SV=1
P69341	Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04857	CAF1	CAF1 family ribonuclease	Family	Interproscan
PF08675	RNA_bind	RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006941	Family	Ribonuclease CAF1	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051181	Family	CAF1 family poly(A)-specific ribonucleases	Interproscan
IPR034042	Domain	PARN, R3H domain	Interproscan
IPR014789	Domain	Poly(A)-specific ribonuclease, RNA-binding	Interproscan
IPR001374	Domain	R3H domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01148	PARN, PNLDC1; poly(A)-specific ribonuclease	EC:3.1.13.4	Messenger RNA biogenesis	ko03019	deepkoala