Gene detail

Detailed information of amic_s0133.g2.t1 in Acropora microphthalma

Genomic Location: sc0000133_pilon:21126...24209
NR annotation: XP_029187985.2, uncharacterized protein LOC114955330 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0133.g2.t1

GGAACACGCAAGAGATAGCCTCTTCTGTCGGTCAACTAACATTCTTAAAAGGTGCCACGGTGCTCGCAAATTGTTTTCGCTCTTTTACGGACATCCTTATAATTTTAGAGTATGGCTTCAATAGTTGAAAAAGCTGTTTGTAGTGCTCTTGTGCTAGTTTTTGAGAAATGCTGGGATAAATCTGTCGAAAACCTGAACAACGGCGGTCTGACAAGTCAAAAGATAGCGGATTTGTTGGAACGTGATATCCGCGGCATCAAGAAAACCTTACATGGGCTAGCTAGAAACGATCTCCTGACATCTATTGACGACTTTGAACTTGGTCTTAAATATTTATGCAACGTAATGAACGCTGAAGATAATCCCTACGGTAGCTTAGAGGGATTAATCGTCGACATTGAGAGTGGAAAACTTCCTCTAAATGGTGATTTGGTCGTAGCCGCAGGTAAAGAAGTTGTGAAAGCCAAAGAGAAGTTCAAAAACTGCAAATCAAGAGCGGAATTAGCCTGCAATATACCAGCCCTTCCAATTTCTGACCTTCTTACTGCTTTTCGATATCGCATTGTGGCGACGATTGTAGAAGCGCTAGGAAATCCTGCTGAAGCTCTGACTGAATGTTGGCATTGCCTTGAAAAGCTACATTCTCTTCCTGAAGTACAGCGCAGCTTCAAGACTTTGGATGAGGGAATGTTTTATAAGAGAAAGCGAGCAGAAATTGTAGCCACAGTATACCAGATTAATCACGTTGTTTACAATGTCGCACAATCTGTTGGTCACGCTGTAAATGTGTGGAAGTGGCCTTTTATCAACACCGGCTCGGACAGATTGGATCCATTACGTGATGCCAGAATAACTGAATTCCTCAAAAAGGAGCCAACAACGAGTCGTTGCTGTGTCCATTTGCCGTCAATTGGTCATGAGGGAGATGATGCGCAGCAGCTGAAGTCACCATGGGGTATGGCAAGTGATACTAATGGGAATTTCATAATTGCTGACCACAGAAGCAATTGTGTTAAAGTGTTTGATGGCCAGGGCAAGTTTCAGCAAGCTTTCTCTCCCAATGTTGGTGCCAATAGTGATAGTGGCACAAACAATGAAGGTTGTGAAATCTTTGATGTAGCAACTGATGTAAGCAATAACATCTACATGCTCTCAAAGAGCATGATGCATGGTGAGACGAAATATGGGATTTTTGTCAAATCCTCTTCTCAAATGAGTAATTTTTTTTATCTGAGGAATGAGCTTTTGCCATGGTCCTGGTACTTACCATCTTTGACTGTCACAGAGGATGACAAAGTTTTAGTGCGAGGAAAACTAAGTGATAAGCATGTCGTAGATGTATATGACATCAATGGGAAGTTTATCCGCTGCTTTGGAAAGGATAAATTAAAGAATCCGACAGCAATCTCTGCAGCCAACGGTAGCACCACTATAGTACTAGATAAAGAGGAATCTAAGTACTATCTTCGCATCTTTGATGTGGAAAATGGGAAGCAACTGTATAAGTTTGTTGTTGAAGAATCATTTTCCTTTGCTGACATTGCCTTTCACAAGGCAAGTTCTGGCAAGCAAATCATTATTGCAGGCAAAAAGCAAGAAGAACCTCTTTGTGTGCTGGCCTATTCCTTGGAAGGTACCACATTTCTACGGAGTGTGCATGTCAATTTTGATGGAGTAGATTGTTTGAGATCATTGGCAGTTACTCCTGAGGGACACATTGGTGTTGCTGTTGGATGTCTGAGAAAGCAGGATGCCAACGAGTTTGTCACTCCGGCTGAATCTTTAATTGATTCAGATTATGACTACAAGTTACTTGTTATTTGAAACAAGACTTGCTGATGTCTCAACTGGGCAGGTGCAGCAGAGTAGTGTAAGACAATATTGATAAATGAGAATTATCATGAAATGTGTGCAATTATATTAATGAGCCAAAGCATGCCATTGCATCTAATTTTGAACTACTCTTTACAAGATTAACCATtatgataatgaaaagattaattgaatttttgtcgtgcatttcctattttagcatattcaaatgcgctttacaatcattttaattttgtcggtaatatcgtacatctgcatatgaaggcgctgctggcagctgctatcagtcaattagggatttcacccaacccaccctaatcccatgtatgtcggagatacatacgtaaggacaaactaccacagtgggaactccgtgccctactctttacaaatagtcggtgggtcctAATAATAATAATTATTATTTGACATCAACCATTGATATGAATGAATTATAAATTACTTTGTTGGGTTAATTAAGATTTGGGCTGTTTATTAGTTGTAGAGTTCATGGTTCAATGACCACATGCCAACTCAGAAATTCAGGGCTAGGGTATTCTTCCTTGAATGACAATAATATTATTATGATCTGTACCTATGGTAGGTGCAAGAGCATTGGATCTTCAAGGGTAAGGGTGCCCAGATTGTGACACACTCAGGGTATCTGTCTCCTTAGAAATAAGTTGCATAAATGAGTAACTGGTGGTATTTATTTGCAACCTATATAATTATTTCTTTCCTTTATGTACTTTGAAATTCAGTTCTAAAGAATAAGTATTACAATAGTGACACTCAAAGCACTCTTCTGCTAATAGATTTGTTAATTTTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000185 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030371 all species →	Molecular Function	translation repressor activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0133.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.